Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g1021 ATGCGCGCCCTCACCGTAAGATACCTATGCACCCTCAGCAACCTCTTCCGCTCTCAGTTGTTGACCCGCCGCAAACGCAACTCCAACGTTGTCCCCTTCACGGAACCTTATCCTGAATCCGAAGACGAGCTGCACCTCTCCTCAGAGCTCGACCTCGCTCGTGACACTTCCCAAGGGGATTCGGTTGACGATGATGAGGGTACTAAAGAGCTTTCTGAGATATTGAGATCTAAAGAGGACAAGAGGATTGCTTCAGAGGAATTTGATGATGATGAAGAACAAAGGAAGAGTGCTGTGGATTTACCGTGGATACCGGACCTGTCTCATGTTAAGTTGTCGGTGAAACGGAAGCAGGCATCGCGTGTGAGGAAACAAAAGTGGATTTTTGAATACACGAGCGATGACCGTTTCGACAGGTTAATTAAAATGTGTGCAGATAAACTAGGAGCGGGAAAGACCTTTAATGTGTTTGGTCACTTGGGTAGAGAAACGGGTGTGAAAGAGTACAATGCATTGATAAAAATGTGCATAAAGAAGGCTAGGGAGTCTGACGACAAATTAATTGCTGTAAGAGAAATGAGTAAGGCTTTTCATCTTTTCAAATCAATGAGGGATCTTGGGTTTCCACTAGAAGAGAAAACGTATGGTCCACTTCTTTTTTATTTAGTTGATATGGGTTTGGTTCAAGAATTTCAACTTTTCACTGATATTATCAAAGCCGAGAACGCTAGTTCAGCTTCACGATTGGGTTACTATGAAATGTTGCTGTGGTTAAGAGTTAACGATGAAGAAATGATCCGGGATATTTGTGAATATATTACAGTTGAAGATAGAGAAGACACTTCCGCTTTACGAGAAAGTTACTTGATGGCTCTTTGTGAAAGTGATCAGAAGATGCAGATTTTGGATGTGGTGAAGAATATAGACATCACCAAGCTTTCATCTGCAAAATTTATTGCAGATATATTCCAATCATTAGGCAGGCTCCAGCTGGAATCTGTTGCAGACGATTTACTTTTGGATTTGAGAGCACGTGATCATGATGCCGACCACATTTCAAACTTCATTGTTAGCTATGCTGTTAGCATTCCAAATTTAGCGGTTGAGGATATCATCCCCAAAGTCAAGAATATACATGAATTACTGGAAGTGTTCCCTTCATCCTTATCCTATGAAAAACTTATTTTGCATTGCTGTAGATTAGACAAGGTGGGCATAGCTCTTGATATTGTTGAAAAAATGTGTGAAGCTGGCTTTACCTTGTCATCTGAGGTGTTACAATACATTTTACAAATCTGTGAGGAATCTTATGAATATATTTTGTTTGAAGGTGCATACAGGATGATTGGTGACTTAGAGGAAATGAATTTCAAACCTACAACAAACATGTACAATTCTATAATGGCAGGATATTTTCGAGAGAAGAACATCAGTGGTGGGTTGAGGGTCCTCAAGCACATGAAAGGTGCCAATGTAAACCCTGATTCTCAGACTTTCTGCTATTTGATTCACAATTGTGAAACGGAAGATGATATAATGAAGTATTGTGAAGAAATGAAGCAATCTGGAGTCCAACCTACAAAACAAATTTTTATGGCCCTTATTAATTCATATGCAGCTTTTGGAAAATTGGAGAAGGCAAAACAGGTAGTTTTAGATCCAAAAATACCAAACAAGAGCTTAAATGAAATCAAGAGTGTACTTGTCTCAGCTCTTGCATCACATGGGCAATTGTGCGAGGCTCTTCTTGTATATGAGGAGATTAAGAAAGCTGGACATAATTTAGAGCCAAAAGCTGTTACAACATTGATTGAGGCGTTCACTCAATTCAATGGGGAGTTGGATGGACTGCTGCTTCTACTTGAGGAAGTGAGTGATCTAGACTATTGGGTTGATGCTTGCTTCAAGGTTATCATGTACTGTATACGGAACAAGAATTTGAGTTCTTCTATTCTCTTGTTCAAACAACTCAAGGACAAGTTTGAAAACAATGATATAGTAATGGAAGCTCTTTTTGATGCAGTATTTTCTCTAATTGCAGCATCTGAGTCAACTCATTTACAGATTGGCCTGGACTTGCTTTGGGCAATCAAGGATGAGCTTGGCCTTATGCCTTCACGGCAGTGTCTTGATTTTCTTCTGAGTGCTTGTGCAAATGCTGGAGATTTGAATAATGCTCGCTTGATCTGGAGAGAGTACGAGGTTGCTGGATTTCCTTACAATGTACTAAGTTACTTGAGGATGTATCAGGCACTTTTGGCAGCAGGAGATGGTAGATCTGCTTACTTTATGCTTAAGAAAATTCCACAAGACGATGCCGAGGTTTGTTCTGTCATCATAGCATGTCAGGAAACTTACAGGGGTACAAATTCTGTAGGAGAAAAGAAAGAGACAAAAGAAGGGAAAGAGTACTAA 2415 0.4021 MRALTVRYLCTLSNLFRSQLLTRRKRNSNVVPFTEPYPESEDELHLSSELDLARDTSQGDSVDDDEGTKELSEILRSKEDKRIASEEFDDDEEQRKSAVDLPWIPDLSHVKLSVKRKQASRVRKQKWIFEYTSDDRFDRLIKMCADKLGAGKTFNVFGHLGRETGVKEYNALIKMCIKKARESDDKLIAVREMSKAFHLFKSMRDLGFPLEEKTYGPLLFYLVDMGLVQEFQLFTDIIKAENASSASRLGYYEMLLWLRVNDEEMIRDICEYITVEDREDTSALRESYLMALCESDQKMQILDVVKNIDITKLSSAKFIADIFQSLGRLQLESVADDLLLDLRARDHDADHISNFIVSYAVSIPNLAVEDIIPKVKNIHELLEVFPSSLSYEKLILHCCRLDKVGIALDIVEKMCEAGFTLSSEVLQYILQICEESYEYILFEGAYRMIGDLEEMNFKPTTNMYNSIMAGYFREKNISGGLRVLKHMKGANVNPDSQTFCYLIHNCETEDDIMKYCEEMKQSGVQPTKQIFMALINSYAAFGKLEKAKQVVLDPKIPNKSLNEIKSVLVSALASHGQLCEALLVYEEIKKAGHNLEPKAVTTLIEAFTQFNGELDGLLLLLEEVSDLDYWVDACFKVIMYCIRNKNLSSSILLFKQLKDKFENNDIVMEALFDAVFSLIAASESTHLQIGLDLLWAIKDELGLMPSRQCLDFLLSACANAGDLNNARLIWREYEVAGFPYNVLSYLRMYQALLAAGDGRSAYFMLKKIPQDDAEVCSVIIACQETYRGTNSVGEKKETKEGKEY 804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g1021 804 Gene3D Tetratricopeptide repeat domain 132 317 IPR011990 GO:0005515
Aed5g1021 804 Gene3D Tetratricopeptide repeat domain 389 563 IPR011990 GO:0005515
Aed5g1021 804 TIGRFAM PPR: pentatricopeptide repeat domain 463 495 IPR002885 -
Aed5g1021 804 Pfam PPR repeat 531 550 IPR002885 -
Aed5g1021 804 PANTHER OS02G0132600 PROTEIN 442 798 - -
Aed5g1021 804 Pfam PPR repeat family 459 506 IPR002885 -
Aed5g1021 804 Gene3D Tetratricopeptide repeat domain 568 802 IPR011990 GO:0005515
Aed5g1021 804 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 460 494 IPR002885 -
Aed5g1021 804 PANTHER OS02G0132600 PROTEIN 10 439 - -
Aed5g1021 804 PANTHER OS02G0132600 PROTEIN 442 798 - -
Aed5g1021 804 PANTHER OS02G0132600 PROTEIN 10 439 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g1021 Aed-Chr5 8062740 8072182 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g1021 357 753 Glycosyltransferase AT1G05670 19.872 2.52e-10 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g1021 - - gmx:100787964 1295.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g0720 1 8326279 8334044 Aed5g1021 5 8062740 8072182 PCT