LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed1g0761	ATGGCGGCTGCTACGACGTCGTGTTCTTCAGCAATCGCCGCCGCGTCCGAAACCCTAGCTAAACCTGCATCCACTAGAAGCTTCTCCGCCACCAACCTCCCTCTGCAATCTTCATTTTCGAAGCTCGGCTTCAAATCCCTAAGATTTCGCCGATGCGCCGCCACCGGTGGCTCCGCCCTCGGAGCTCGCATGGTATCGGCGCCGGCTGTCAAGGCCCCCGCGCTGCTCGATTTCAACACGAAGGTTTTCAAGAAGGAGAAGATTAACCTCGCCGGACACGACGAGTACATCGTGAAAGGCGGCAGGGATTTGTTTCACTTGTTGCCCGATGCTTTCAAGGGGATCAAGCAGATTGGTGTCATCGGTTGGGGATCCCAGGGACCTGCTCAAGCTCAGAACCTTAGGGACTCACTTGCTGAAATAAAGTCTGATATTGTTGTTAAGATTGGACTCAGGAAAGGTTCTAGGTCCTTCGCTGAAGCTCGGGCAGCTGGGTTTTCTGAGGAGAATGGAACTCTAGGCGACATATGGGAAACTGTCTCGGGCAGTGATCTTGTGATGCTGTTAATTTCTGATTCCGCACAGGCTGATAACTATGAAAAAATATTCTCTCACATGAAGCCAAACAGCATACTTGGGCTTTCCCATGGTTTTCTTCTTGGGCATTTACAATCATTGAGACTTGACTTTCCAAAGAACATTAGTGTAATTGCTGTGTGCCCAAAGGGGATGGGTCCATCCGTAAGGAGGCTCTATGTCCAAGGCAAAGAGATAAATGGTGCTGGAATTAATGCAAGTTTTGCAGTCCACCAGGATGTGGATGGAAGGGCTACTGATGTTGCTTTGGGATGGTCCGTTGCCCTTGGTTCTCCATTCACTTTTGCCACTACATTAGAGCAAGAATACAAGAGTGATATCTTTGGGGAGAGAGGCATTTTACTTGGTGCTGTTCATGGAGTTGTGGAATCCTTGTTTAGGAGATACACTGATAATGGAATGAACGAGGATCTGGCCTATAAGAATACTGTTGAGTCTATAACAGGAATCATATCTAAAACCATCTCAACTAAGGGCATGCTAGCTGTATACAATGCTTTATCTGAAGATGAGAAAAGGGAATTTGAGAAGGCTTATAGTGCTTCTTATTATCCTAGTATGGAAATTCTGTATGAGTGCTACGAGGATGTAGCCAGTGGTAGTGAGATTCGCAGTGTTGTTCTGGCTGGGCGTCGCTTTTATGAGAAAGAGGGTCTACCTGCTTTTCCCATGGGTAACATCGATCAAACCCGCATGTGGAAGGTTGGTGAGCGTGTCCGATCTACAAGACCAGCAGGTGATCAAGGCCCATTATATCCTTTCACTGCTGGTGTCTTTGTGGCATTGATGATGTCCCAGATTGAGATCCTGAGGAAGAAAGGGCATTCCTACTCTGAAATCATTAACGAGAGTGTCATCGAGGCTGTTGATTCTTTGAATCCTTTCATGCATGCCCGTGGTGTTTCATTCATGGTTGATAACTGTTCAACAACTGCTAGGTTGGGTTCAAGGAAATGGGCTCCACGATTTGACTACATCCTAACCCAGCAAGCCATGGTGGCGGTGGATAACGGAGCACCCATTAACCAGGACTTAATCAGCAACTTTCTGTCAGACCCAGTGCATGGAGCCATTAAAGTTTGCGCTGAACTTAGACCCACAGTAGATATTTCTGTGCCAGCAGATGCAGACTTTGTTCGTCCTGAGTTGCGCGCTACCAATTAG	1761	0.4747	MAAATTSCSSAIAAASETLAKPASTRSFSATNLPLQSSFSKLGFKSLRFRRCAATGGSALGARMVSAPAVKAPALLDFNTKVFKKEKINLAGHDEYIVKGGRDLFHLLPDAFKGIKQIGVIGWGSQGPAQAQNLRDSLAEIKSDIVVKIGLRKGSRSFAEARAAGFSEENGTLGDIWETVSGSDLVMLLISDSAQADNYEKIFSHMKPNSILGLSHGFLLGHLQSLRLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINASFAVHQDVDGRATDVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHGVVESLFRRYTDNGMNEDLAYKNTVESITGIISKTISTKGMLAVYNALSEDEKREFEKAYSASYYPSMEILYECYEDVASGSEIRSVVLAGRRFYEKEGLPAFPMGNIDQTRMWKVGERVRSTRPAGDQGPLYPFTAGVFVALMMSQIEILRKKGHSYSEIINESVIEAVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILTQQAMVAVDNGAPINQDLISNFLSDPVHGAIKVCAELRPTVDISVPADADFVRPELRATN	586

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed1g0761	586	ProSiteProfiles	KARI C-terminal domain profile.	297	445	IPR000506	GO:0004455\|GO:0009082
	Aed1g0761	586	SUPERFAMILY	6-phosphogluconate dehydrogenase C-terminal domain-like	299	583	IPR008927	-
	Aed1g0761	586	Pfam	Acetohydroxy acid isomeroreductase, NADPH-binding domain	116	290	IPR013116	-
	Aed1g0761	586	ProSiteProfiles	KARI C-terminal domain profile.	456	582	IPR000506	GO:0004455\|GO:0009082
	Aed1g0761	586	ProSiteProfiles	KARI N-terminal domain profile.	98	296	IPR013116	-
	Aed1g0761	586	Gene3D	-	64	291	-	-
	Aed1g0761	586	PIRSF	Ilv5_plant	1	586	IPR016206	GO:0004455
	Aed1g0761	586	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	76	294	IPR036291	-
	Aed1g0761	586	Pfam	Acetohydroxy acid isomeroreductase, catalytic domain	456	531	IPR000506	GO:0004455\|GO:0009082
	Aed1g0761	586	Pfam	Acetohydroxy acid isomeroreductase, catalytic domain	299	443	IPR000506	GO:0004455\|GO:0009082
	Aed1g0761	586	PANTHER	KETOL-ACID REDUCTOISOMERASE, MITOCHONDRIAL	6	584	IPR013023	GO:0009082\|GO:0016491
	Aed1g0761	586	Gene3D	-	292	565	IPR013328	GO:0016491
	Aed1g0761	586	PANTHER	KETOL-ACID REDUCTOISOMERASE	6	584	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed1g0761	Aed-Chr1	8605580	8609563	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed1g0761	K00053		-	gmx:100812763	1085.48

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aed1g0761	1	8605580	8609563	Aed1g0761	1	8605580	8609563	ECH
	Aed1g0761	1	8605580	8609563	Aed5g0933	5	7140222	7144060	PCT