Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0822 ATGCCGCAGCACCAACAAGTTGCTCTAATGGAACCTGTTCTCAGCTACAACAACAATGGCAATGGCAACAACAGTGACTATGATGTCATAAGCTGGTTTGAAGAAGTGTCTCAGAACGCTGGTTTTGTTCAGACTCAGTTGCTGAGCCAGATTCTGAAGCAGAACCATGGAGTGGAATATCTCAAGAAATGGTTGGGGAACTACAACATCCTTGAGATGGATGCATGTGCATTGGAATCCCTTTTCTCCACTGTGGTTCCTCTTGCCTCACATGCTGATTTTGAGCCATTTATCCAACGGATTGCAGATGGGGACACTGCTCCTTTACTCACTCAACAACCCATAACCACTCTTTCCTTAAGTTCTGGAACCACGGATGGGAGGCAGAAGTTCGTACCCTTTACCCGCCATAGTGCACAAACCACGCTTCAAATATTCACCTTAGCTGCAGCCTATAGATCAAGGGTTTATCCAATAAAAGAAGGTGGAAGGATTCTTGAATTCATATACAGCAGCAACAGGTTCAAAACAAAAGGAGGTTTAACAGTAGGAACCGCCACAACACATTACTATGCCAGTGAGGAATTCAAAATCAAACAGCATAAGACAAAGTCATTCACTTGCAGCCCTCAAGAAGTGATTTCTGGTGGAGACTATAAACAATCCACATATTGCCACCTCCTACTTGGACTATTCTTCTCTGACCAAGTTGAGTTCATAACCTCAGCTTTTGTCTACAGCATGGTGCAAGCCTTCACAAGTTTTGAGGAACTTTGGAGGGAAATTTGCAATGACATAAGAGATGGAACTCTGAGCTCAAGGATCAAACCACCCAAAATGAGAAAAGCTGTTTTGGACATTATAATCACTCCAAACCCAAATTTGGCATCAAAGTTAGAAGCTTTATGCCAGGAGCTAGAAGTGGTGGATTGGTTTGGTTTGATCCCAAAACTCTGGCCAAATGCTAAGTATGTGTACTCCATAATGACAGGGTCCATGCAACCATATTTGAAGAAACTTAGGCACTATGCAAATGGGTTGCCTTTGGTTAGTGCTGATTATGGCTCAACTGAGAGCTGGATAGGGGTCAATGTTGACCCTAGTTTGCCACCAGAAGATGTTACATTTGCTGTGGTTCCAACTTTCTCTTACTTTGAGTTCATACCACTCCACAGGCATCATGACAAAATTAAATTCAGTTCATCAGGAGCTGATCATGATTCCATGGAAGACAAGCCAATTCCACTGTCTCAGATCAAAGTTGGACAAGAGTATGAAGTAGTCCTCACAACTTTCACCGGACTGTACAGGTGCAGATTAGGGGATGTGGTAGAAGTGGGTGGGTTCCACAAGAATGGGACCCCAAAGTTGAACTTTGTGTGCAGAAGAAAGCTAATCCTGACACTAAACATAGACAAGAACACAGAAAAGGACCTTCAGCTAGTGGTAGAGAGAGGGTCCCAGATACTGAACAAGGAAGCAAAAGCGGAGCTAGTTGATTTCACAAGCTACGCGGACGTGTCGTCAAAGGCAAACAAGCAACCGGGACACTACGTGATTTACTGGGAGATAAAAGGGAAGGTTGAGGACAAGATACTCGCAGCGTGCTGCACCGAAATGGACAAGTCCTTCGCGGACCATGGCTATGTTGTGTCCAGAAAAACCAACTCCATTGGACCCTTGGAGCTCTGCGTTTTGGAGACTGGGACTTTCAAGAAGATCTTAGACACTTTCATTGCCAATGGAGCAGCTCTCAGCCAGTTCAAGACCCCTAGGTGCACCAATAATCATGCCCTCCTCAAAATTCTTAACACCTGCACCATCAAAAACTTTCGCAGCACTGCTTACACCTCTAATTAA 1860 0.4435 MPQHQQVALMEPVLSYNNNGNGNNSDYDVISWFEEVSQNAGFVQTQLLSQILKQNHGVEYLKKWLGNYNILEMDACALESLFSTVVPLASHADFEPFIQRIADGDTAPLLTQQPITTLSLSSGTTDGRQKFVPFTRHSAQTTLQIFTLAAAYRSRVYPIKEGGRILEFIYSSNRFKTKGGLTVGTATTHYYASEEFKIKQHKTKSFTCSPQEVISGGDYKQSTYCHLLLGLFFSDQVEFITSAFVYSMVQAFTSFEELWREICNDIRDGTLSSRIKPPKMRKAVLDIIITPNPNLASKLEALCQELEVVDWFGLIPKLWPNAKYVYSIMTGSMQPYLKKLRHYANGLPLVSADYGSTESWIGVNVDPSLPPEDVTFAVVPTFSYFEFIPLHRHHDKIKFSSSGADHDSMEDKPIPLSQIKVGQEYEVVLTTFTGLYRCRLGDVVEVGGFHKNGTPKLNFVCRRKLILTLNIDKNTEKDLQLVVERGSQILNKEAKAELVDFTSYADVSSKANKQPGHYVIYWEIKGKVEDKILAACCTEMDKSFADHGYVVSRKTNSIGPLELCVLETGTFKKILDTFIANGAALSQFKTPRCTNNHALLKILNTCTIKNFRSTAYTSN 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0822 619 Pfam GH3 auxin-responsive promoter 32 597 IPR004993 -
Aed5g0822 619 PANTHER GH3 DOMAIN-CONTAINING PROTEIN 23 616 IPR004993 -
Aed5g0822 619 PANTHER INDOLE-3-ACETIC ACID-AMIDO SYNTHETASE GH3.10 23 616 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0822 Aed-Chr5 6201269 6205534 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0822 28 614 EF-hand Containing Proteins AT1G23160 34.775 1.33e-117 360
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0822 K14487 - gmx:100792358 1094.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0822 5 6201269 6205534 Aed5g0822 5 6201269 6205534 ECH
Aed1g0842 1 9137288 9141325 Aed5g0822 5 6201269 6205534 PCT