Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0842 ATGGAACCACCCCTAGTTCTCAGTTACAATGTTAGTAATGGTGGCAGCAGCAACAACAATGGCTTTGTTGATATCATTTCCTGGTTTGAAGACGTGTCCAAGAACGCTGGTTCGGTTCAGACTCAGACACTGTGCAAGATTCTGAAACAGAACTGTGGGGTTGAATATCTAAAGAAATGGCTGGGGAGCTACAATATCTCAGAAATGGATGCATGTGCCTTGGAATCTCTTTTTACTTCTGTGGTTCCCCTTGCTTCACATGCAGATTTCGAGCCATGTATCCAAAAAATTGCAGATGGAGACACAGCTCCTATACTCACACAACAACCCATAACCACTCTTTCCTTAAGGGTTTATCCCACAAGGGAAGGAGCAAGGAATCTTGAGTTCATATACAGCAGCAACCAGTTCAAGACAAAAGGAGGGTTAACAGTTGGAACAGCCACAACACACTACTACGCAAGTGAAGAATTCAAAACCAAACAGGAGAAAACAAAGTCATTCACTTGCAGCCCCTACGAAGTTATTTCGGGAGGGGACTATAAACAATCCACTTACTGCCACCTCCTTCTTGGCCTCTTCTTCTCTGATCACGTAGAGTTTATTTCCTCAGCTTTTGTCTTTGGCATAGTGCAAGCCTTTTGCACTTTCGAAGAGCTTTGGAAAGAACTTTGCAATGACATAAGACACGGCACTTTGAGTCCAAGAATCAAGTTACCCAAAATGAGAGAAGCTGTTTTGGGTATAATCACTTCAAACCCCACTTTGGCCTCAAAACTAGAAGAAGCATGCTTGGAGCTAGAACATGTGGATTGGTTTGGTTTGGTTCCAAAGCTTTGGCCAAATGCCAAGTACGTTTATTCCATAATGACAGGCTCTATGCAACCTTATTTGAAAAAGGTTAGGCATTATGCAAATGGGGTGGCACTAGTAAGTGGTGACTATGGTTCAACTGAGAGTTGGATAGGGGTTAATGTGGAACCGAGTTTGGCTCCAGAGAAAGTAACCTTTGCTATAGTACCCACGTTCTCTTACTTTGAGTTCATACCACTTTATAGACAGAAACAAGATTGCTGCAGCTCACTTAACAAATTAAAAGGGCTGTATAGGTACAGACTAGGAGACGTGGTGGAAGTGGCAGGTTATCACAATGGGACCCCAAAGCTGAACTTTATATGCAGAAGAAAACTAATTCTAACAGTGAATATAGACAAGAACACAGAGAGAGACCTTCAAAATGTGGTAGAGAAAGGGTCACAAGTGCTGCTAAACAAGGCAAAAAAAGGAGCTGAGGTGGTTGATTTCACAAGCCATGCAGATGTGTCAAAGCAGCCAGGCTGTTACGTCATATTCTGGGAGATAAAAGGTGAGGCCGAGGACAAGGTACTTGAGGCATGCTGCAGGGAAATGGATGCAGCTTTTGTTGACCATGGCTATGTTGTCGCCAGGAAAACCAGTTCAATAGGACCTTTGATGCTTTGCATTGTAGAGAGAGGAACTTTTCAAAAGATTTTGGATTATTTCGTGGAGAATGGTGCAGCACTGGGCCAGTACAAGACCCCTAGGTGCACTAACAACCCGCTCCTCCTCCAAATTCTTACTGCATGCACCATTCAAACTTTTCGCAGCACTGCTTATAATTAA 1644 0.4325 MEPPLVLSYNVSNGGSSNNNGFVDIISWFEDVSKNAGSVQTQTLCKILKQNCGVEYLKKWLGSYNISEMDACALESLFTSVVPLASHADFEPCIQKIADGDTAPILTQQPITTLSLRVYPTREGARNLEFIYSSNQFKTKGGLTVGTATTHYYASEEFKTKQEKTKSFTCSPYEVISGGDYKQSTYCHLLLGLFFSDHVEFISSAFVFGIVQAFCTFEELWKELCNDIRHGTLSPRIKLPKMREAVLGIITSNPTLASKLEEACLELEHVDWFGLVPKLWPNAKYVYSIMTGSMQPYLKKVRHYANGVALVSGDYGSTESWIGVNVEPSLAPEKVTFAIVPTFSYFEFIPLYRQKQDCCSSLNKLKGLYRYRLGDVVEVAGYHNGTPKLNFICRRKLILTVNIDKNTERDLQNVVEKGSQVLLNKAKKGAEVVDFTSHADVSKQPGCYVIFWEIKGEAEDKVLEACCREMDAAFVDHGYVVARKTSSIGPLMLCIVERGTFQKILDYFVENGAALGQYKTPRCTNNPLLLQILTACTIQTFRSTAYN 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0842 547 Coils Coil 542 547 - -
Aed1g0842 547 Pfam GH3 auxin-responsive promoter 28 115 IPR004993 -
Aed1g0842 547 Pfam GH3 auxin-responsive promoter 124 526 IPR004993 -
Aed1g0842 547 PANTHER INDOLE-3-ACETIC ACID-AMIDO SYNTHETASE GH3.10 23 116 - -
Aed1g0842 547 PANTHER INDOLE-3-ACETIC ACID-AMIDO SYNTHETASE GH3.10 363 547 - -
Aed1g0842 547 PANTHER INDOLE-3-ACETIC ACID-AMIDO SYNTHETASE GH3.10 117 358 - -
Aed1g0842 547 PANTHER GH3 DOMAIN-CONTAINING PROTEIN 23 116 IPR004993 -
Aed1g0842 547 PANTHER GH3 DOMAIN-CONTAINING PROTEIN 363 547 IPR004993 -
Aed1g0842 547 PANTHER GH3 DOMAIN-CONTAINING PROTEIN 117 358 IPR004993 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g0842 Aed-Chr1 9137288 9141325 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g0842 24 544 EF-hand Containing Proteins AT1G23160 33.162 8.32e-98 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g0842 K14487 - gmx:100814683 924.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g0842 1 9137288 9141325 Aed1g0842 1 9137288 9141325 ECH
Aed1g0842 1 9137288 9141325 Aed5g0822 5 6201269 6205534 PCT