Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0742 ATGTATATAACAACGGCCTCTTCCTCTGCCTCTTCGCTCCTCAGAGCAACCAGGCCCAAACTTTTCTCTCCTAATTCTAGAACCTTCGCTTATCCTCCTTCTTTCTCTCTCCGCACTTCCTTCTCCGCCGCCATTCGTTCCCTCCCGCGCTGGAGCCACCGCCTCCATTCCGCCTCTCCGCTCACTCCCCATCCTCGTATCAGCGCCGTCGCTCCCGCCGTCGAACGCTTCCACCGCGAAATCGCTACCATGGCCAATGAAAATCCTTTCAAGGGAAACTTGACCAGTCTCCCCAAGCCTGGTGGTGGCGAGTTTGGAAAGTTCTACAGTCTTCCTTCTTTCAATGATCCAAGAATTGACAGGTTACCATACTCCATCAGAATTCTCCTTGAATCTGCCATTCGTAATTGTGACAATTTTCAAGTAAAAAAGGAAGATGTTGAGAAGATCCTCGACTGGGAAAACAGTTCTACAAAGCAAGTTGAGATTCCATTCAAGCCTGCTCGTGTTCTCTTGCAGGATTTTACTGGAGTCCCGGCTGTTGTTGACCTGGCTTGCATGCGTGATGCTATGAATAAGCTTGGCAGTGATTCAAATAAGATAAACCCTCTGGTTCCTGTTGATCTTGTCATTGATCATTCAGTGCAAGTTGATGTTACAAGGTCAGATAATGCAGTGCAGGCCAATATGGAGCTTGAATTTCAGAGAAACAAGGAGAGATTTGCTTTTCTTAAATGGGGGTCAACTGCATTCCGTAACATGCTTGTTGTTCCTCCTGGTTCTGGTATAGTACATCAGGTCAATCTTGAATATCTTGGAAGGGTTGTATTCAACAATGAGGGCCTACTCTATCCTGACAGTGTGGTTGGGACTGATTCACATACAACAATGATAGACGGGCTTGGTGTTGCTGGATGGGGTGTTGGAGGTATTGAAGCTGAGGCCACAATGCTTGGTCAGCCGATGAGCATGGTTTTGCCCGGTGTTGTTGGGTTCAAGTTATCTGGAAAACTACACAATGGTGTTACAGCAACAGACTTAGTTCTAACTGTGACTCAAATTCTCCGAAAGCACGGCGTTGTGGGGAAATTTGTTGAATTTTATGGTGATGGTATGGGTGAATTATCTTTGGCTGACAGGGCCACTATTGCCAATATGTCTCCTGAATATGGTGCCACCATGGGCTTCTTCCCTCCGCAACAAGATAGAGTGTATTCATCATATCTTGAATTAAACCTTTCCGATGTTGAACCATGTATTTCAGGACCAAAGAGACCACATGATCGGGTGTCTTTGAAGGAAATGAAGGCTGATTGGCATGCTTGTCTTGATAACAAAGTTGGGTTTAAGGGATTTGCTATACCAAAAGAGGCACAAGGAAAAGTTGCAAAATTTGATTTCCATGGGCAGCCAGCGGAGCTCAAGCATGGTAGTGTTGTGATTGCTGCAATCACAAGCTGTACAAATACATCAAACCCAAGTGTAATGCTCGGTGCTGGTCTTGTTGCAAAAAAGGCTCATGAGCTTGGTTTGCAGGTCAAGCCTTGGGTTAAAACTAGTCTTGCTCCAGGCTCTGGAGTTGTTACAAAATATCTACTCCAGAGTGGACTGCAAAAATATCTAAATGAACAAGGTTTTCATATTGTTGGATTTGGCTGTACTACATGTATTGGCAATTCTGGAGAGCTGGATGAGTCTGTTGCTTCTGCCATCTCAGAAAATGACATTGTAGCGGCTGCAGTGTTGTCTGGGAACCGTAATTTTGAGGGTCGAGTACATCCATTGACAAGAGCTAACTACCTCGCCTCTCCTCCTCTAGTTGTAGCTTATGCTCTTGCTGGCACGGTTGACATAGACTTTGGGAGGGAGCCAATTGGGACAGGGAAGGATGGAAAGAATGTCTACTTGAGGGATATCTGGCCATCTACTGAAGAAATTGCCGAGGTTGTCCAATCCAGTGTGTTGCCTGACATGTTCCGAAGTACATATGAGGCTATTACCAAAGGGAACACAATGTGGAATCAACTACAAGTTCCTGCTGACACACTATACTCATGGGACCCCAACTCAACATATATCCATGAACCCCCATACTTCAAGAACATGACCATGGATCCTCCTGGATCTCATGGGGTAAAGGATGCTTATTGCCTGCTGAATTTTGGTGACAGTATAACCACTGATCATATTTCTCCAGCTGGAAGCATTCACAAGGACAGTCCTGCTGCCAAATACCTTGTTGAGCGTGGGGTGGAACGCAAGGACTTCAATTCTTATGGAAGTCGTCGTGGCAATGATGAGGTGATGGCAAGGGGAACTTTTGCCAACATTCGCCTTGTTAACAAGCTCTTGAATGGGGAAGTTGGCCCAAAGACAATTCACATTCCAACAGGGGAAAAGCTTTATGTGTTTGATGCAGCAACGAGATACAAGGCTTCTGGGCAAGACACCATTGTGCTGGCTGGAGCTGAATATGGCAGTGGAAGTTCTAGAGATTGGGCTGCCAAGGGTCCAATGCTACTGGGAGTCAAAGCTGTGATAGCCAAGAGTTTCGAGAGAATTCATCGCAGTAACTTGGTCGGAATGGGTATTATTCCTCTTTGCTTCAAACCCGGTGAGGATGCGGACACATTGGGATTAACTGGTTATGAACGTTATTCAATTGACCTCCCAAGTAATATCACTGAGATTAGGCCCGGCCAAGATGTGACAGTCACAACAGATAATGGAAAATCTTTTACTTGCACAGCACGCTTTGACACTGAGGTCGAACTTGCTTACTTCAACCACGGAGGCATACTTCCATATGTCATAAGGAATCTCATTAAGCAGTGA 2835 0.4564 MYITTASSSASSLLRATRPKLFSPNSRTFAYPPSFSLRTSFSAAIRSLPRWSHRLHSASPLTPHPRISAVAPAVERFHREIATMANENPFKGNLTSLPKPGGGEFGKFYSLPSFNDPRIDRLPYSIRILLESAIRNCDNFQVKKEDVEKILDWENSSTKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNKLGSDSNKINPLVPVDLVIDHSVQVDVTRSDNAVQANMELEFQRNKERFAFLKWGSTAFRNMLVVPPGSGIVHQVNLEYLGRVVFNNEGLLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEATMLGQPMSMVLPGVVGFKLSGKLHNGVTATDLVLTVTQILRKHGVVGKFVEFYGDGMGELSLADRATIANMSPEYGATMGFFPPQQDRVYSSYLELNLSDVEPCISGPKRPHDRVSLKEMKADWHACLDNKVGFKGFAIPKEAQGKVAKFDFHGQPAELKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKAHELGLQVKPWVKTSLAPGSGVVTKYLLQSGLQKYLNEQGFHIVGFGCTTCIGNSGELDESVASAISENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAGTVDIDFGREPIGTGKDGKNVYLRDIWPSTEEIAEVVQSSVLPDMFRSTYEAITKGNTMWNQLQVPADTLYSWDPNSTYIHEPPYFKNMTMDPPGSHGVKDAYCLLNFGDSITTDHISPAGSIHKDSPAAKYLVERGVERKDFNSYGSRRGNDEVMARGTFANIRLVNKLLNGEVGPKTIHIPTGEKLYVFDAATRYKASGQDTIVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKPGEDADTLGLTGYERYSIDLPSNITEIRPGQDVTVTTDNGKSFTCTARFDTEVELAYFNHGGILPYVIRNLIKQ 944
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0742 944 CDD AcnA_IRP 169 616 - -
Aed5g0742 944 SUPERFAMILY Aconitase iron-sulfur domain 102 679 IPR036008 -
Aed5g0742 944 Gene3D Aconitase, domain 3 420 642 IPR015931 -
Aed5g0742 944 Gene3D Aconitase, domain 4 707 943 IPR015928 -
Aed5g0742 944 SUPERFAMILY LeuD/IlvD-like 683 942 - -
Aed5g0742 944 PANTHER ACONITASE/IRON-RESPONSIVE ELEMENT FAMILY MEMBER 399 944 IPR006249 -
Aed5g0742 944 Gene3D Aconitase, domain 3 87 419 IPR015931 -
Aed5g0742 944 Pfam Aconitase C-terminal domain 743 870 IPR000573 -
Aed5g0742 944 PANTHER ACONITATE HYDRATASE 55 398 - -
Aed5g0742 944 PANTHER ACONITASE/IRON-RESPONSIVE ELEMENT FAMILY MEMBER 55 398 IPR006249 -
Aed5g0742 944 Gene3D - 643 704 - -
Aed5g0742 944 ProSitePatterns Aconitase family signature 2. 545 558 IPR018136 -
Aed5g0742 944 PRINTS Aconitase family signature 254 262 IPR001030 -
Aed5g0742 944 PRINTS Aconitase family signature 359 372 IPR001030 -
Aed5g0742 944 PRINTS Aconitase family signature 483 494 IPR001030 -
Aed5g0742 944 PRINTS Aconitase family signature 230 243 IPR001030 -
Aed5g0742 944 PRINTS Aconitase family signature 545 558 IPR001030 -
Aed5g0742 944 PRINTS Aconitase family signature 297 312 IPR001030 -
Aed5g0742 944 PRINTS Aconitase family signature 373 386 IPR001030 -
Aed5g0742 944 PRINTS Aconitase family signature 283 296 IPR001030 -
Aed5g0742 944 Pfam Aconitase family (aconitate hydratase) 401 614 IPR001030 -
Aed5g0742 944 Pfam Aconitase family (aconitate hydratase) 148 401 IPR001030 -
Aed5g0742 944 ProSitePatterns Aconitase family signature 1. 479 495 IPR018136 -
Aed5g0742 944 CDD AcnA_IRP_Swivel 720 890 IPR044137 -
Aed5g0742 944 PANTHER ACONITATE HYDRATASE 399 944 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0742 Aed-Chr5 5525646 5536696 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0742 K01681 - gmx:100778506 1774.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0742 5 5525646 5536696 Aed5g0742 5 5525646 5536696 ECH
Aed1g0935 1 9709515 9716947 Aed5g0742 5 5525646 5536696 PCT