Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0686 ATGGGCGTGTTCAGCGAAGACCCGAACCCGATTGTGATCCGCGAGGTCTGGGCCTCCAATCTCAAATCTGAATTCGAACTCATCCGCGAACTCATCGATCGCTATCCTTTTATCTCAATGGACACGGAATTTCCCGGTGTGATTTTCCGGCCACACGTGGACCTAACAAAACCCTACAACCACCGCAACCGCCGCCCCTCAGAACACTACCAACTCCTCAAGTCCAACGTTGACGTTCTCAACCTCATCCAGGTCGGCCTCACCCTCACGGACGCTGCCGGCAACCTCCCCGCCGAAGAAACCACCGGTAACCGCTTCATCTGGGAATTCAACTTCCGTGACTTCGACGTAGCGCGTGACTCCTACGCGCCTGACTCCATCGACCTCCTCCGCCGCCAGGGGATCGATTTCGCACGTAACACAGTCGAAGGGGTGGACTCCACGCGCTTCGCGGAACTGATGATGTCCTCGGGACTCGTCTGCAACGACGCTGTGAGTTGGGTCACGTTTCACAGCGCGTACGATTTCGGTTACTTAGTTAAGATCATGACCCGAAGGAGTTTACCGACACGGTTGGAGGAATTCTTGAAAATCGTGAAGGTGTTCTTCGGCGACAACGTGTACGATGTGAAGCACATGATGAGGTTCTGTGACACGCTCTATGGCGGCTTGGACCGCGTTGCACGGACGCTTAACGTGGACCGCGCCGTAGGGAAGTGCCACCAGGCTGGGTCAGACAGCTTGCTGACCTGGCACGCGTTCCAGAAGATTGTTGACCTTTATTTTGTAAAGGATGAGCACCAAAAACATGCCGCCATAACAGATTCTCGCTTGATTATCATAGATTGGATGCAGAAGCACAAAAACAATGTGATTGAAGGTGACCTACAATTGTCAGAGCGATTCATTGTGAATTGGTGTTGGCGTGTTGCTTGTGTAAAGTTCAAAGAGTCTAACGGTGCCTCTGACTATAAGTAG 978 0.5266 MGVFSEDPNPIVIREVWASNLKSEFELIRELIDRYPFISMDTEFPGVIFRPHVDLTKPYNHRNRRPSEHYQLLKSNVDVLNLIQVGLTLTDAAGNLPAEETTGNRFIWEFNFRDFDVARDSYAPDSIDLLRRQGIDFARNTVEGVDSTRFAELMMSSGLVCNDAVSWVTFHSAYDFGYLVKIMTRRSLPTRLEEFLKIVKVFFGDNVYDVKHMMRFCDTLYGGLDRVARTLNVDRAVGKCHQAGSDSLLTWHAFQKIVDLYFVKDEHQKHAAITDSRLIIIDWMQKHKNNVIEGDLQLSERFIVNWCWRVACVKFKESNGASDYK 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0686 325 Gene3D - 2 281 IPR036397 GO:0003676
Aed5g0686 325 PANTHER RIBONUCLEASE CAF1, RIBONUCLEASE H-LIKE DOMAIN PROTEIN-RELATED 10 272 - -
Aed5g0686 325 SUPERFAMILY Ribonuclease H-like 12 265 IPR012337 -
Aed5g0686 325 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 10 272 IPR039637 GO:0004535|GO:0030014
Aed5g0686 325 Pfam CAF1 family ribonuclease 16 145 IPR006941 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0686 Aed-Chr5 5040443 5043603 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0686 K12581 - gmx:100811298 503.056
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0686 5 5040443 5043603 Aed5g0686 5 5040443 5043603 ECH
Aed1g0995 1 10159753 10160679 Aed5g0686 5 5040443 5043603 PCT