Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g0995 ATGATTCCACCGCCAACCAAACAATCCTACGCTTCACTCTTCCTGCTTTTCCTTGTGCTGTTGCAGAAGCGATTCCAAATGGGCATGGTCGTCCAAGAAAACCCTAATTCCAAAAACCCGATCCAGATCCGCGAGGTCTGGGCCTCCAACCTCGATTCCGAATTCAAGATCATCCGCCAACTCATTGATGATTATCCTTTCGTATCCATGGACACTGAATTCCCCGGTGTTGTTTTCCGCCCCTATGTGGTGGACCCCACAAAACCCTCCGAGCACTACCGCTTCCTGAAATCCAACGTGGACGCACTCAACCTCATCCAGGTCGGCCTCACCCTCTCCGACGCCGACGGCAACCTCCCTCACCTCGGCACCGCGAACCGCTTCATCTGGGAATTCAACTTCAGCGATTTCAACGTCGAGCGTCACGACCACGCGCCTGACTCCATAGATCTCCTCCGTCGCCAGGGCATCGACTTCCACCGCAACGCCGCCGAAGGCGTGGAGTCCTCGCGCTTCGCGGAACTCGTGATGTCCTCGGGACTCGTCTGCAACGAGGATGTGAGCTGGGTGACGTTTCACAGCGCGTACGATTTCGGGTACTTGGTTAAGATCCTCACCCAACGCAACCTGCCCAACGGATTGGAGGATTTTTTGAAGATCTTGAGGGCGTTTTTCGGAGACAACGTTTACGACATCAAGCACATGATGCGGTTCTGCGACACACTCTATGGCGGTTTGGACCGCCTCGCGAGGACCCTCAACGTGGACCGGGCCGTTGGGAAGTGCCACCAGGCCGGGTCCGATAGCCTGCTCACGTGGCATGCGTTTCAGAAAATGAGGGATATTTATTTCGTTAAGGATGGGGGGGCCCAGAAACATGCCGGTGTTTTGTTTGGATTGGAGTTTACTTCTTCTCTTGCCAATTGA 927 0.5469 MIPPPTKQSYASLFLLFLVLLQKRFQMGMVVQENPNSKNPIQIREVWASNLDSEFKIIRQLIDDYPFVSMDTEFPGVVFRPYVVDPTKPSEHYRFLKSNVDALNLIQVGLTLSDADGNLPHLGTANRFIWEFNFSDFNVERHDHAPDSIDLLRRQGIDFHRNAAEGVESSRFAELVMSSGLVCNEDVSWVTFHSAYDFGYLVKILTQRNLPNGLEDFLKILRAFFGDNVYDIKHMMRFCDTLYGGLDRLARTLNVDRAVGKCHQAGSDSLLTWHAFQKMRDIYFVKDGGAQKHAGVLFGLEFTSSLAN 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g0995 308 PANTHER CCR4-ASSOCIATED FACTOR 1 HOMOLOG 11-RELATED 36 302 - -
Aed1g0995 308 Pfam CAF1 family ribonuclease 46 168 IPR006941 -
Aed1g0995 308 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 36 302 IPR039637 GO:0004535|GO:0030014
Aed1g0995 308 Gene3D - 29 303 IPR036397 GO:0003676
Aed1g0995 308 SUPERFAMILY Ribonuclease H-like 43 300 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g0995 Aed-Chr1 10159753 10160679 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g0995 K12581 - gmx:100781759 514.998
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g0995 1 10159753 10160679 Aed1g0995 1 10159753 10160679 ECH
Aed1g0995 1 10159753 10160679 Aed5g0686 5 5040443 5043603 PCT