LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed5g0664	ATGACAGAGGTGCTTCATTTCTCGTCCTCTTCGTCGCCAGCCACGTCATCTTCGGATGGCATTATCCTCGCCAGCTCCGAGCAAGAAGCACCGGCAGCGGCGGCGGCGACACCTTCTTCCTCCTCCGTAAGCCTGGTGGTGGAGGGGTTTGCTAGCGTGACCGAGTGTGACGCGCGTGACAGGACGCAGCAGGAGCTCTCGCTTCTGGCGATTCTTGTGACCCTTTTGAGGAAATCGCTGGTTGCTTGCAAGAGCGAGGAGGAGATATGCGCAATGGAGATTGGGTGGCCCACTAACGTGCGCCATGTTGCGCACGTCACCTTCGACAGGTTCAATGGCTTCTTGGGCTTGCCACGCGAGTTTGAGCCCGAAGTCTCTACAAGGCCTCCAAGTGCTAGTGCAACTGTTTTTGGAGTTTCAACCGAATCCATGCAGTTATCATTTGACACGAGAGGGAACAGTGTGCCAACCATACTGCTACTAATGCAAAGGCACTTGTATGCTCTCGGAGGGTTGCAGGCAGAGGGGATTTTCAGAATTAATGCAGATAATAGTCAAGAGGAGTATGTTAGGGATCAATTAAATAGTGGATTGGTCCCAGAAGATGTTGATATACATTGCTTGGCAGGACAAATTAAGGCTTGGTTTAGGGAACTGCCAACTGGTGTTCTGGATTCTTTATCACCAGAGCATGTAATGCAATGCCAGACTGAAGAGGATTGTGCTGAACTGGCACGGCAGCTACCTCACACTGAAGCTTCGCTCTTGGACTGGGCTATTAATCTAATGGCTGATGTTGTCCAAGAGGAACACCTGAATAAGATGAATGCACGCAACATTGCCATGGTTTTTGCTCCAAACATGACTCATATGGCAGACCCTTTGACTGCATTGATGTATGCTGTTCAAGTGATGAACTTCCTGAAGTCACTTATACTAAGGACACTGCAAGAGAGAAAGGATTGTGTGGCAGAATCGTCTCCCGGATTTTGTTTAGAGCCGTCTGACGAGAATGGGGACCGAAGTCTTTCACAGTCCTGCCAGCAAGATGATGATGATGATGATGTTGCCAATGAAAATGAAGACTTGGTTGAGGAAGAAACCTTTGCTTCTGAGAAAACAGAATTTGAAAGTTCCTCTGAATCTCTCCAAAGCAACTATTCAACTGAAGGAGAATGTGGCAGTTTGATAGGCTCTTCTGAGAGTCTGGTCTCTGAGGAGGACTTGTATTGTGAGTTTCCACCCAAAGGAAACATTGGTAAGAGTAAGAGTGGACAATCAAGTAACTCCAGTGCTAAAAAAGAGTCCAAGAAAACCAGAGGCCTTCTCCAACCTGTGATCGATGCAACAGTGGCTGTTGATAAAAAGGGTATTAGCAATCTGAGCCGCATAGATTCAAGATCAGAACGGATAGAAGCCTGGCGGTGA	1428	0.4797	MTEVLHFSSSSSPATSSSDGIILASSEQEAPAAAAATPSSSSVSLVVEGFASVTECDARDRTQQELSLLAILVTLLRKSLVACKSEEEICAMEIGWPTNVRHVAHVTFDRFNGFLGLPREFEPEVSTRPPSASATVFGVSTESMQLSFDTRGNSVPTILLLMQRHLYALGGLQAEGIFRINADNSQEEYVRDQLNSGLVPEDVDIHCLAGQIKAWFRELPTGVLDSLSPEHVMQCQTEEDCAELARQLPHTEASLLDWAINLMADVVQEEHLNKMNARNIAMVFAPNMTHMADPLTALMYAVQVMNFLKSLILRTLQERKDCVAESSPGFCLEPSDENGDRSLSQSCQQDDDDDDVANENEDLVEEETFASEKTEFESSSESLQSNYSTEGECGSLIGSSESLVSEEDLYCEFPPKGNIGKSKSGQSSNSSAKKESKKTRGLLQPVIDATVAVDKKGISNLSRIDSRSERIEAWR	475

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed5g0664	475	CDD	CRIB	92	132	-	-
	Aed5g0664	475	Pfam	P21-Rho-binding domain	93	120	IPR000095	-
	Aed5g0664	475	MobiDBLite	consensus disorder prediction	1	20	-	-
	Aed5g0664	475	MobiDBLite	consensus disorder prediction	326	391	-	-
	Aed5g0664	475	ProSiteProfiles	CRIB domain profile.	94	107	IPR000095	-
	Aed5g0664	475	Gene3D	CRIB domain	90	125	IPR036936	-
	Aed5g0664	475	SMART	RhoGAP_3	153	316	IPR000198	GO:0007165
	Aed5g0664	475	PANTHER	MKIAA1688 PROTEIN	1	475	IPR044785	GO:0005096
	Aed5g0664	475	CDD	RhoGAP	156	312	-	-
	Aed5g0664	475	MobiDBLite	consensus disorder prediction	349	366	-	-
	Aed5g0664	475	Gene3D	Rho GTPase activation protein	126	322	IPR008936	GO:0007165
	Aed5g0664	475	MobiDBLite	consensus disorder prediction	414	441	-	-
	Aed5g0664	475	SMART	PBD_5	94	128	IPR000095	-
	Aed5g0664	475	Pfam	RhoGAP domain	156	290	IPR000198	GO:0007165
	Aed5g0664	475	MobiDBLite	consensus disorder prediction	375	391	-	-
	Aed5g0664	475	PANTHER	PAK-BOX/P21-RHO-BINDING DOMAIN RHO GTPASE ACTIVATING PROTEIN	1	475	-	-
	Aed5g0664	475	SUPERFAMILY	GTPase activation domain, GAP	134	313	IPR008936	GO:0007165
	Aed5g0664	475	ProSiteProfiles	Rho GTPase-activating proteins domain profile.	139	320	IPR000198	GO:0007165

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed5g0664	Aed-Chr5	4881923	4885595	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed5g0664	-		K20642	gmx:100784019	724.546

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aed5g0664	5	4881923	4885595	Aed5g0664	5	4881923	4885595	ECH
	Aed1g1014	1	10258565	10262108	Aed5g0664	5	4881923	4885595	PCT