Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0616 ATGCAGACCCTCACTCCACCATCCCCCAACCCGCTCAACTATCTCAACCCGGCGCGCCACTCGATTATTCGAGCCGCCCCGAGCCGATTCGCCGTTAAATGCTGTTACGGCTTCGAAAAGGGATTTGGCGCGAGCCGAGCCGACTGGCAAAGCTCCTGCGCCATCTTAGCCAGTAAAGTCTGGTCGCAGCGGGAAGATTCTTCCGCCGCCGACGGCGGCGACAACAACAACGTCGGCGCCGTGAACGGCCACAACACCGGCGTAACAAATCTAAATCTCGTACCTGTCAAATTCGGTGGTGAAAACAACAAGCCGCTTCCGCCGAGGCCTCTCACGATCTCCGACCTCTCGCCGGCGCCGATGCACGGCTCGCAGCTGCGCGTGGCGTACCAAGGCGTTCCCGGCGCGTACTCCGAAGCCGCGGCGGGGAAGGCGTATCCGAACGGCGAAGCCATCCCGTGCGACCAGTTCGAGGTGGCGTTTCAAGCGGTAGAGCTCTGGATCGCGGATCGCGCGGTTTTGCCGGTGGAAAACTCCCTCGGCGGCTCGATTCATCGGAACTACGACCTCCTCCTCCGCCACCGCCTCCACATCGTCGGCGAGGTCCAGCTCCCGGTGCACCACTGCCTCCTCGCTCTCCCCGGCGTCCGCAAGGAGTTTCTCACGCGCGTGATTTCCCATCCGCAAGCCTTAGCGCAGTGCGAGCACTCTCTCACGAAGCTCGGCCTCACCGTGGCGCGTGAGGCAGTCGACGACACCGCCGGCGCGGCCGAGTTCGTCGCCGCGAACGACCTCCGCGATACGGCGGCAATCGCGAGCGCGCGCGCGGCAGATCTCTACGGCCTCCAGATCCTCGCCGACGGAATCCAGGACGATCCGAACAACGTGACGCGATTTGTAATGCTGGCGCGCGAACCGATAATTCCGCGCACGGATCGGCCGTTCAAGACGAGCATCGTGTTCGCTCACGATAAAGGAACTTCGGTCCTCTTCAAAGTGCTTTCCGCGTTTGCGTTCAGGAACATAAGCTTAACGAAGATCGAGTCCAGGCCTCACCGTATCCGTCCAATTCGCGTTGTTGATGATGAGAGTGAAGGAACCGCGAAACACTTTGAGTATCTCTTTTATATTGATTTCGAGGCTTCTATGGCTGAGGTTAGGGCACAGAACGCGCTTGCTGAGGTTCAAGAATTCACGTCCTTCTTGCGAGTGTTGGGGAGTTACCCTATCGATATGACACCGTGGAACCCCTCTTGTCCCCGCGAAAACTAG 1272 0.6006 MQTLTPPSPNPLNYLNPARHSIIRAAPSRFAVKCCYGFEKGFGASRADWQSSCAILASKVWSQREDSSAADGGDNNNVGAVNGHNTGVTNLNLVPVKFGGENNKPLPPRPLTISDLSPAPMHGSQLRVAYQGVPGAYSEAAAGKAYPNGEAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQLPVHHCLLALPGVRKEFLTRVISHPQALAQCEHSLTKLGLTVAREAVDDTAGAAEFVAANDLRDTAAIASARAADLYGLQILADGIQDDPNNVTRFVMLAREPIIPRTDRPFKTSIVFAHDKGTSVLFKVLSAFAFRNISLTKIESRPHRIRPIRVVDDESEGTAKHFEYLFYIDFEASMAEVRAQNALAEVQEFTSFLRVLGSYPIDMTPWNPSCPREN 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0616 423 Gene3D - 311 412 - -
Aed5g0616 423 PANTHER PREPHENATE DEHYDRATASE P PROTEIN 37 419 - -
Aed5g0616 423 CDD ACT_CM-PDT 316 409 - -
Aed5g0616 423 ProSitePatterns Prephenate dehydratase signature 2. 344 351 IPR018528 GO:0004664|GO:0009094
Aed5g0616 423 Pfam Prephenate dehydratase 128 306 IPR001086 GO:0004664|GO:0009094
Aed5g0616 423 Gene3D - 122 210 - -
Aed5g0616 423 ProSitePatterns Prephenate dehydratase signature 1. 280 302 IPR018528 GO:0004664|GO:0009094
Aed5g0616 423 PANTHER AROGENATE DEHYDRATASE 37 419 - -
Aed5g0616 423 SUPERFAMILY Periplasmic binding protein-like II 127 310 - -
Aed5g0616 423 CDD PBP2_Ct-PDT_like 127 306 - -
Aed5g0616 423 ProSiteProfiles Prephenate dehydratase domain profile. 127 304 IPR001086 GO:0004664|GO:0009094
Aed5g0616 423 Gene3D - 211 292 - -
Aed5g0616 423 ProSiteProfiles ACT domain profile. 318 409 IPR002912 -
Aed5g0616 423 SUPERFAMILY ACT-like 299 410 IPR045865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0616 Aed-Chr5 4501866 4503137 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0616 K05359 - gmx:100809331 736.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1048 1 10473402 10474676 Aed5g0616 5 4501866 4503137 PCT