Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1048 ATGCATACTCTTTCGCCACCTACTTCCAACGCGCTCAATTTCAAGTACGTTCTTCGCCCGCGCCGTCTCGCGCCGCCGACTAGGCTTTCTGTCAAATGCGCTTTCGCCTACGAGCCGGCTAACTATGGACTCGGCTCCAGTCGAGCCGATTGGCAAAGCTCCTGCTCCATCTTAGCCAGCAAGGTCGTTTCTCAGGAACAACCCTCCGCTGACCAGAACAGCGGCACCGCCGACCACGTCGCCGCTGTCAACGGCCACAGAACCGCCGTCAGCGACCTCAACCTCGTTCCAATCGGAAACCTCGCGGAGGCCAACAACAAGCCGCTCCCTCCGAAGCCGTTGACAATCTCCGACCTCTCGCCGGCGCCGATGCATGGTTCCAAGCTCCGCGTCGCATACCAAGGCGTTCCTGGCGCGTACTCCGAGGCGGCCGCAGGAAAAGCCTATCCGAACTGCGAGGCCATTCCGTGCGACCAGTTCGAGGTGGCGTTCCAGGCGGTGGAGCTCTGGATCGCAGATCGAGCCGTTTTGCCGGTTGAAAACTCCCTCGGCGGCTCGATTCATCGGAACTACGACCTCCTCCTCCGCCACCGCCTCCACATCGTCGGCGAGGTCCAGCTCCCGGTCCACCACTGCCTCCTCGCGCTCCCCGGCGTCAGGAAGGATTTCCTCACGCGCGTGATTTCGCATCCGCAGGCACTCGCGCAGTGCGAGCACACGCTCACCAAACTCGGCCTGAACGTGGCGCGCGAGGCCGTGGACGACACCGCCGGCGCCGCGGAGTTCGTCGCTACCAACAACCTCCGCGACACCGCCGCCATCGCGAGCGCACGTGCAGCGGAGCTCTACGGACTGAACGTGATGGCGGACGGAATCCAAGACGATCCGAGCAACGTGACGCGGTTCGTGATGCTGGCGAGAGAACCTATCATTCCGCGGACGGACCGTCCTTTCAAGACGAGCATTGTTTTCGCGCACGACAAGGGAACTTCGGTGCTCTTCAAAGTGCTATCGGCGTTCGCGTTTCGCAACATAAGTTTGACGAAGATAGAGTCGCGACCGCACCGGAACCGTCCGATTCGGCTGGTGGATGACGCGAACGTGGGAACAGCGAAGCACTTCGAGTACTTGTTCTACGTTGATTTTGAGGCTTCCATGGCTGAGGTTAGGGCTCAGAACGCGTTGGCGGAGGTGCAGGAATTCACCTCTTTCTTGCGAGTGTTGGGGAGTTACCCTATGGACATGACACCCTGGACACCCTCCCGGGGAGATTAG 1275 0.6094 MHTLSPPTSNALNFKYVLRPRRLAPPTRLSVKCAFAYEPANYGLGSSRADWQSSCSILASKVVSQEQPSADQNSGTADHVAAVNGHRTAVSDLNLVPIGNLAEANNKPLPPKPLTISDLSPAPMHGSKLRVAYQGVPGAYSEAAAGKAYPNCEAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQLPVHHCLLALPGVRKDFLTRVISHPQALAQCEHTLTKLGLNVAREAVDDTAGAAEFVATNNLRDTAAIASARAAELYGLNVMADGIQDDPSNVTRFVMLAREPIIPRTDRPFKTSIVFAHDKGTSVLFKVLSAFAFRNISLTKIESRPHRNRPIRLVDDANVGTAKHFEYLFYVDFEASMAEVRAQNALAEVQEFTSFLRVLGSYPMDMTPWTPSRGD 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1048 424 CDD ACT_CM-PDT 319 412 - -
Aed1g1048 424 ProSiteProfiles Prephenate dehydratase domain profile. 130 307 IPR001086 GO:0004664|GO:0009094
Aed1g1048 424 SUPERFAMILY Periplasmic binding protein-like II 130 313 - -
Aed1g1048 424 CDD PBP2_Ct-PDT_like 128 309 - -
Aed1g1048 424 ProSitePatterns Prephenate dehydratase signature 1. 283 305 IPR018528 GO:0004664|GO:0009094
Aed1g1048 424 ProSiteProfiles ACT domain profile. 321 412 IPR002912 -
Aed1g1048 424 PANTHER PREPHENATE DEHYDRATASE P PROTEIN 41 424 - -
Aed1g1048 424 Gene3D - 314 415 - -
Aed1g1048 424 Pfam Prephenate dehydratase 131 309 IPR001086 GO:0004664|GO:0009094
Aed1g1048 424 Gene3D - 125 213 - -
Aed1g1048 424 PANTHER AROGENATE DEHYDRATASE 41 424 - -
Aed1g1048 424 Gene3D - 214 295 - -
Aed1g1048 424 ProSitePatterns Prephenate dehydratase signature 2. 347 354 IPR018528 GO:0004664|GO:0009094
Aed1g1048 424 SUPERFAMILY ACT-like 302 414 IPR045865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1048 Aed-Chr1 10473402 10474676 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1048 K05359 - gmx:100781285 781.171
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1048 1 10473402 10474676 Aed1g1048 1 10473402 10474676 ECH
Aed1g1048 1 10473402 10474676 Aed5g0616 5 4501866 4503137 PCT