Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0600 ATGGAAAGAGCGGTGCCCGCCGCCGCTTTCCTCTTCTTCGCCGCCGTGGTTCTCTCGGCGGTTGTCGGGTCTCCGGTGACTCTGACGCTGGAAAGAGCGTTCCCTTCGAATCACGGCGTGGAATTGAGTGAGCTGAGAGCGAGGGACAGCCTCAGACATCGTAGAATGCTGCAGTCTACTAACTACGTTGTAAATTTCCCCGTCAAAGGCACCTTCGATCCTTCCCAAGTCGGGCTTTACTTTACAAAGGTGAAATTGGGTACTCCTCCTAGGGAATTTTATGTGCAGATTGACACTGGCAGTGATGTTCTTTGGGTTAGTTGTGGGTCCTGCAACGGTTGTCCTCAGACAAGTGGGCTCCAAATTCAGCTAAATTACTTTGATCCGGGGAGTTCGTCAACATCATTGTTGATCTCTTGCTCGGACCGAAGGTGCAGGAGTGGAGTACAGTCATCCGATGCAAGCTGTTCCGGTCAGAACAACCAGTGCAGTTACACATTTCATTGTAGCATCCTGCAGACTGGGGACTTAACAAAGTCTGATAGAGCAGTTGATGGGATATTTGGATTTGGGCAACAAGGCATGTCTGTCATTTCCCAACTCTCATCGCAAGGAATAGCACCAAGAGTGTTCTCCCATTGCCTCAAAGGAGATAATAGTGGCGGCGGTGTATTGGTTCTTGGTGAAATTGTGGAGCCAAACATAGTTTATAGTCCACTTGTTCCATCACAGCCACATTACAATTTAAATCTGCAGAGCATCTCTGTTAATGGCCAAATTGTGCCAATTGCCTCTGCAGTTTTTGCTACATCGAATAACAGAGGTACCATTGTTGATTCTGGAACAACTTTGGCATACCTTGCAGAAGAGGCTTACACTCCCTTTGTCAATGCGATTACAGCTCTTGTTCCACAATCCGTACGCAGTGTTCTTTCCAGGGGAAATCAGTGTTACTTAATAACCACCTCCAGCAATGTTGACATTTTCCCCCAAGTAAGTCTGAACTTTGCCGGCGGTGCATCTCTGGTTTTAAGACCACAGGACTACCTTATGCAGCAGAATTATATTGGTGAGGGATCAGTGTGGTGTATTGGCTTTCAGAAAATTCCGGGTCAAAGTATAACTATTCTAGGAGACCTTGTATTAAAAGACAAAATTTTTGTATACGATCTTGCTGGTCAACGCATTGGATGGGCTAACTATGATTGTTCATTGCCGGTTAATGTATCTGCATCAACTGGTAGGGGCAGAAGTGAGTTTGTGGACGCAGGAGAGCTAAATGGAAGCTCTTCTTTACTTGATGATGGGCCTCACATGTTGTTGATAAATACACTGTTTCTTGCTTTCTTCATCATGCACATGACACTAATTTTGTAG 1377 0.4582 MERAVPAAAFLFFAAVVLSAVVGSPVTLTLERAFPSNHGVELSELRARDSLRHRRMLQSTNYVVNFPVKGTFDPSQVGLYFTKVKLGTPPREFYVQIDTGSDVLWVSCGSCNGCPQTSGLQIQLNYFDPGSSSTSLLISCSDRRCRSGVQSSDASCSGQNNQCSYTFHCSILQTGDLTKSDRAVDGIFGFGQQGMSVISQLSSQGIAPRVFSHCLKGDNSGGGVLVLGEIVEPNIVYSPLVPSQPHYNLNLQSISVNGQIVPIASAVFATSNNRGTIVDSGTTLAYLAEEAYTPFVNAITALVPQSVRSVLSRGNQCYLITTSSNVDIFPQVSLNFAGGASLVLRPQDYLMQQNYIGEGSVWCIGFQKIPGQSITILGDLVLKDKIFVYDLAGQRIGWANYDCSLPVNVSASTGRGRSEFVDAGELNGSSSLLDDGPHMLLINTLFLAFFIMHMTLIL 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0600 458 Pfam Eukaryotic aspartyl protease 80 400 IPR033121 -
Aed5g0600 458 ProSiteProfiles Peptidase family A1 domain profile. 80 399 IPR033121 -
Aed5g0600 458 CDD pepsin_A_like_plant 80 403 IPR034161 -
Aed5g0600 458 PANTHER ASPARTYL PROTEASES 9 167 IPR001461 GO:0004190|GO:0006508
Aed5g0600 458 PRINTS Pepsin (A1) aspartic protease family signature 276 287 IPR001461 GO:0004190|GO:0006508
Aed5g0600 458 PRINTS Pepsin (A1) aspartic protease family signature 86 106 IPR001461 GO:0004190|GO:0006508
Aed5g0600 458 PRINTS Pepsin (A1) aspartic protease family signature 375 390 IPR001461 GO:0004190|GO:0006508
Aed5g0600 458 SUPERFAMILY Acid proteases 77 405 IPR021109 -
Aed5g0600 458 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 167 420 - -
Aed5g0600 458 Gene3D Acid Proteases 167 229 IPR021109 -
Aed5g0600 458 Gene3D Acid Proteases 54 166 IPR021109 -
Aed5g0600 458 Gene3D Acid Proteases 230 408 IPR021109 -
Aed5g0600 458 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 9 167 - -
Aed5g0600 458 PANTHER ASPARTYL PROTEASES 167 420 IPR001461 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0600 Aed-Chr5 4379574 4384242 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0600 54 404 Miscellaneous Gene Families AT1G44130 23.940 5.01e-27 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0600 - K00924 gmx:100789004 789.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0600 5 4379574 4384242 Aed5g0600 5 4379574 4384242 ECH
Aed1g1069 1 10602701 10608353 Aed5g0600 5 4379574 4384242 PCT