Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0573 ATGCCATCATCATCACTACCCTATTTCATCCATATGGTTCCTATTCTCTCCCTTCTTGTTGTACTCTCATGTATGATTTGTTCTAGTAGTGCTCAGGGACCACCTTCACCTGGCTACTACCCCAGTTCCAAAATTGGTCCTGTTAGTTTTTATCAAGGGTTTAGAAACCTCTGGGGACCTCAGCATCAGAGAATAGACCAAGGTTCATTGACAATCTGGCTTGACTCTAACTCAGGGAGTGGATTCAAGTCACTTCACTCTTATCGATCTGGTTACTTCGGTGCTGCCATTAAGCTCCAACCTGGTTACACTGCAGGAGTCATTACATCATTATATCTTTCAAACAACCAAGACCACCCCGGAAACCATGATGAAATTGACATTGAGTTCCTTGGCACCACGCCAGATAAGCCTTATGTCTTGCAGACAAATGTATACATCAGAGGAAGTGGTGATGGGAATATTATAGGAAGAGAGATGAAGTTTCATCTTTGGTTTGACCCAACACAGGATTTTCACAACTATGGCATTCTATGGAAACCCAATGAGATAATATTTTTTGTGGATGATGTCCCCATAAGGAGGTATCCAAGGAAAAGTGAGGCCACATACCCCTCAAGGCCAATGTATGTGTACGGTTCAATATGGGATGCATCTTCTTGGGCAACAGAGGATGGAAAATACAAAGCTAATTATAATTACCAACCCTTCGTTGGTAGGTATAAAAACTTCAAACTTCAAGGTTGCACCACTGAAAGTTCTGCCTCATGCAAGCCACCTTCTTTCTCACCATCTGGCTTTGGTAGTCTGAGCCCTCAGCAGTTTAGGTCAATGCAATGGGTCCAAAACAACTACTTGGTCTACAATTATTGCCATGACCCTAGGAGAGACCACACACTTATCCCAGAGTGCTAG 915 0.4306 MPSSSLPYFIHMVPILSLLVVLSCMICSSSAQGPPSPGYYPSSKIGPVSFYQGFRNLWGPQHQRIDQGSLTIWLDSNSGSGFKSLHSYRSGYFGAAIKLQPGYTAGVITSLYLSNNQDHPGNHDEIDIEFLGTTPDKPYVLQTNVYIRGSGDGNIIGREMKFHLWFDPTQDFHNYGILWKPNEIIFFVDDVPIRRYPRKSEATYPSRPMYVYGSIWDASSWATEDGKYKANYNYQPFVGRYKNFKLQGCTTESSASCKPPSFSPSGFGSLSPQQFRSMQWVQNNYLVYNYCHDPRRDHTLIPEC 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0573 304 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 269 304 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Aed5g0573 304 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 29 241 IPR000757 GO:0004553|GO:0005975
Aed5g0573 304 Gene3D - 30 304 - -
Aed5g0573 304 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 31 16 304 - -
Aed5g0573 304 PIRSF EndGlu_transf 10 304 IPR016455 GO:0010411|GO:0016762|GO:0042546
Aed5g0573 304 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 16 304 IPR044791 GO:0004553
Aed5g0573 304 Pfam Glycosyl hydrolases family 16 52 233 IPR000757 GO:0004553|GO:0005975
Aed5g0573 304 SUPERFAMILY Concanavalin A-like lectins/glucanases 50 304 IPR013320 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0573 Aed-Chr5 4184571 4186886 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0573 16 304 Glycoside Hydrolase AT3G44990 68.041 1.08e-144 407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0573 K08235 - gmx:100781528 595.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0573 5 4184571 4186886 Aed5g0573 5 4184571 4186886 ECH
Aed1g1090 1 10753350 10755756 Aed5g0573 5 4184571 4186886 PCT