Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0520 ATGCTAGTTCGTAAACGACTCGTCGTTTCGCTCTCTCTAGCAACTCTCCTTCTCTTCTCCTCACTCTCCCTCACTCTCTGCGACACAGCCCCGAAAAACGACAATAAAAGCGACGACGACGAAGATCTCAGCTTCCTCGAGGAGCCCGATGACACCGCCACTCCGCCCCACGGCCACGGCCATTTCCCAGATCCCGATCAGTTCGACGACGGCGACGACGGCGACGGTGACGACGACGACTTCAGCGACTTCTCCGGCTTCGACCACTCGTCAGAGGAGGCCTTCAAGGAGCCCGAGGTCGACGACAAGGACGTTGTTGTTTTGAAGGAGCGCAACTTCACCACCGCCGTCGAGAACAACCGCTTCGTCATGGTCGAGTTCTACGCGCCCTGGTGCGGCCACTGCCAGTCCCTCGCGCCGGAGTACGCCGCCGCCGCCACCGAGCTCAAGCCCGACGGCGTCATTCTGGCCAAGGTCGACGCCACCGTCGAAAACGAATTGGCGCACGAGTACGACGTTCAGGGCTTCCCCACCGTCTTCTTCTTCGTCGATGGAGTTCACAAGCCTTACACTGGCCAGAGAACCAAAGACGCTATAGTGACTTGGATTAAGAAGAAGATAGGACCTGGTGTGTCCAACATAACTACGGTGGATGAAGCTGAACGCATATTGACCGCGGAAAGCAAAGTTGTTTTGGGCTTCCTCAACTCTTTAGTTGGTGCTGAGAGTGATGAGCTAGCTGCAGCATCAAAGCTTGAGGATGATGTCAATTTTTATCAAACTGTGGTACCTGATGTGGCAAAGCTTTTCCATATTGATGCAAGTGTTAAACGCCCTGCTTTGATCTTGCTAAAGAAGGAGGAGGAGAAACTCAACCATTTTGATGGCCAATTTGTAAAATCTGAAATAGCTGATTTTGTAACCTCCAACAAGCTTCCTTTGAAAGTGCCCCCGGTAATCTTTGAAAGTCAAATCAAGAAACAGTTGTTGCTGTTTGTGACTTCAAATGACACAGAGAAGTTTGTTCCAGTATTTAAAGAAGCAGCAAAAATTTTCAAGGGGAAGCTGATCTTTGTTCAAGTGGAACTGGATAATGAAGATGTAGGAAAGCCTGTTGCAGATTATTTTGGTATCACTGGGAGTGGTCCCAAAGTACTTGCATACACAGGAAATGATGATGGAAGAAAATTTTTACTTGATGGAGAGGTGACTGTTGACACAATTACGACGTTTGGGAATGATTTCCTTGAAGACAAGCTAAAACCTTTCCTCAAGTCAGACCCAATTCCTGAAAATAATGATGGCGATGTGAAAATAGTTGTTGGGAATAACTTTGATGAAATTGTCTTGGATGAGTCAAAGGATGTTCTGCTCGAGATTTATGCTCCCTGGTGTGGCCACTGCCAAGCTCTGGAGCCAACATACAACAAGCTTGCTAAACATCTTCACAGTATTGAGTCTATTGTTATAGCCAAGATGGATGGAACAACAAATGAGCATCCCAGGGCCAAGTCTGATGGATTCCCCACCCTTCTCTTCTTCCCAGCAGGAAACAAGAGTGACCCTATTCCTGTTGATGTGGATCGTACAGTGAAAGCCTTTTATAAGTTCCTCAGGAAACATGCATCAATCCCATTCCAGCTCCAGAAACCAGCCTCAACTACTAAAACCGGGAGCGAGAGTTCTGATGTCAAGGAAAGCCAAAGCAGCAGCACCGATGCGAAGGATGAATTATGA 1737 0.4819 MLVRKRLVVSLSLATLLLFSSLSLTLCDTAPKNDNKSDDDEDLSFLEEPDDTATPPHGHGHFPDPDQFDDGDDGDGDDDDFSDFSGFDHSSEEAFKEPEVDDKDVVVLKERNFTTAVENNRFVMVEFYAPWCGHCQSLAPEYAAAATELKPDGVILAKVDATVENELAHEYDVQGFPTVFFFVDGVHKPYTGQRTKDAIVTWIKKKIGPGVSNITTVDEAERILTAESKVVLGFLNSLVGAESDELAAASKLEDDVNFYQTVVPDVAKLFHIDASVKRPALILLKKEEEKLNHFDGQFVKSEIADFVTSNKLPLKVPPVIFESQIKKQLLLFVTSNDTEKFVPVFKEAAKIFKGKLIFVQVELDNEDVGKPVADYFGITGSGPKVLAYTGNDDGRKFLLDGEVTVDTITTFGNDFLEDKLKPFLKSDPIPENNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQALEPTYNKLAKHLHSIESIVIAKMDGTTNEHPRAKSDGFPTLLFFPAGNKSDPIPVDVDRTVKAFYKFLRKHASIPFQLQKPASTTKTGSESSDVKESQSSSTDAKDEL 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0520 578 Gene3D Glutaredoxin 317 431 - -
Aed5g0520 578 SUPERFAMILY Thioredoxin-like 213 314 IPR036249 -
Aed5g0520 578 CDD PDI_b'_family 320 416 - -
Aed5g0520 578 TIGRFAM ER_PDI_fam: protein disulfide isomerase 103 578 IPR005792 GO:0003756
Aed5g0520 578 CDD PDI_b_family 211 310 - -
Aed5g0520 578 CDD PDI_a_PDI_a'_C 437 538 - -
Aed5g0520 578 MobiDBLite consensus disorder prediction 52 67 - -
Aed5g0520 578 ProSitePatterns Thioredoxin family active site. 124 142 IPR017937 -
Aed5g0520 578 SUPERFAMILY Thioredoxin-like 98 208 IPR036249 -
Aed5g0520 578 ProSiteProfiles Thioredoxin domain profile. 423 543 IPR013766 -
Aed5g0520 578 Gene3D Glutaredoxin 92 209 - -
Aed5g0520 578 PRINTS Thioredoxin family signature 131 140 - -
Aed5g0520 578 PRINTS Thioredoxin family signature 123 131 - -
Aed5g0520 578 PRINTS Thioredoxin family signature 172 183 - -
Aed5g0520 578 ProSiteProfiles Thioredoxin domain profile. 86 208 IPR013766 -
Aed5g0520 578 SUPERFAMILY Thioredoxin-like 432 542 IPR036249 -
Aed5g0520 578 SUPERFAMILY Thioredoxin-like 328 434 IPR036249 -
Aed5g0520 578 Pfam Thioredoxin 105 205 IPR013766 -
Aed5g0520 578 Pfam Thioredoxin 437 521 IPR013766 -
Aed5g0520 578 Gene3D Glutaredoxin 211 316 - -
Aed5g0520 578 MobiDBLite consensus disorder prediction 549 578 - -
Aed5g0520 578 PANTHER PROTEIN DISULFIDE ISOMERASE 2 570 - -
Aed5g0520 578 MobiDBLite consensus disorder prediction 549 568 - -
Aed5g0520 578 Pfam Thioredoxin-like domain 246 413 - -
Aed5g0520 578 MobiDBLite consensus disorder prediction 68 82 - -
Aed5g0520 578 TIGRFAM pdi_dom: protein disulfide-isomerase domain 109 206 IPR005788 GO:0003756
Aed5g0520 578 MobiDBLite consensus disorder prediction 30 83 - -
Aed5g0520 578 CDD PDI_a_family 106 203 - -
Aed5g0520 578 Gene3D Glutaredoxin 432 544 - -
Aed5g0520 578 PANTHER PROTEIN DISULFIDE-ISOMERASE 2 570 - -
Aed5g0520 578 ProSitePatterns Thioredoxin family active site. 457 475 IPR017937 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0520 Aed-Chr5 3742942 3747060 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0520 K09580 - gmx:100790223 945.651
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0520 5 3742942 3747060 Aed5g0520 5 3742942 3747060 ECH
Aed1g1128 1 11078402 11082562 Aed5g0520 5 3742942 3747060 ECH
Aed1g1128 1 11078402 11082562 Aed5g0520 5 3742942 3747060 PCT