Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0483 ATGCGTGTGCTCAAAAGCCATAGTGGTAGCATTTTTGATAGGCACATGCACATTGGCTTCATCACTATGGAACCTAAGTCCTTGTTTGTTCCTCAGTACCTTGACTCCAATCTCATCATATTCATCCGTAGAGGGGAAGCAAAGTTGGGATTCATATATGACGATGAGCTAGCAGAAAGGCGATTGAAGACAGGGGACGTGTACATGATTCCATCCGGTTCACCATTCTATTTGGTGAACATTGGTGAAGGTCAGAGACTTCATGTCATATGCAGCATTGACCCCTCTACAGCCTTGGGTTTTCCATTCTTCAATTTTATCTTTGCCATGCAGTCCTTCTATCTTGGTGGAGGAGCCGATTCACACTCGCTGCTTTCTGGATTCGAACCTGCCATCCTTGAAGCTGCATTTAATCAAATCTTCTCCAAGGAACTAGGTGGGCCAATTATGTACGTGGGTGATTCTCAAGCACCTGGCTTATGGACTAAACTCCTTCAACTGAACAAGGAAGACAAAGAGCAACAGCTGAAGAAAATGGTGCAAGACCAAGAAGAAGAAGAAGAAGAAGAAAAGCAAACAAGTAGGTCATGGTTGAAGCTCTTGGAAACTGTATTTGGGAAGGTGAATGAGAAAACAGCGAACAAAGACACTGCTGGCTCCCCTGACTCTTACAACCTCTATGACAAGAAACCTGATTTCAAAAACGATTATGGTTGGAGCAAGGAACTGCATGGATGCGAGTATTCTCCACTCAGCAAACCTGACATTGGCGTTTTCCATGTCAGTCTCACAGCGGGATCCATGTTGGCACCTCATGTGAATCCAACAGCAACCGAGTATGGCATAGTGCTGAGTGGTTATGGTGAACTTCACATAGTGTTTCCAAACGGAAGCAAAGCAATAAACAGTAAGATCAAACAAGGGGACGTGTTTGTTGTGCCAAGATACTTCCCCTTCTGTCAAGTAGCATCAAGGGATGGACCCTTGGAGTTCTTTGGGTTCTCCACATCTGCCAAGAAGAACAACCCACAGTTTCTGGCTGGTGCTGTGTCCCTTCTCAGGACCGTGTTGGGGCCTGAGCTTGCAGCGGCATTCGGAGTGAGTGAGGACACGATGTGGCATGCCATTAAAGCTAAGGATCAGGCTGTGTTCATGCCATCATCATGGGTTGCACCAGCGGAAGATGAAGGGAAAATGGAAGAAGAGAAGGTGCACATGCTTCCTAAGGCCATTAGAAGCTTTGCCAATGATGTGGTTATGGATGTTTTTTAA 1272 0.4575 MRVLKSHSGSIFDRHMHIGFITMEPKSLFVPQYLDSNLIIFIRRGEAKLGFIYDDELAERRLKTGDVYMIPSGSPFYLVNIGEGQRLHVICSIDPSTALGFPFFNFIFAMQSFYLGGGADSHSLLSGFEPAILEAAFNQIFSKELGGPIMYVGDSQAPGLWTKLLQLNKEDKEQQLKKMVQDQEEEEEEEKQTSRSWLKLLETVFGKVNEKTANKDTAGSPDSYNLYDKKPDFKNDYGWSKELHGCEYSPLSKPDIGVFHVSLTAGSMLAPHVNPTATEYGIVLSGYGELHIVFPNGSKAINSKIKQGDVFVVPRYFPFCQVASRDGPLEFFGFSTSAKKNNPQFLAGAVSLLRTVLGPELAAAFGVSEDTMWHAIKAKDQAVFMPSSWVAPAEDEGKMEEEKVHMLPKAIRSFANDVVMDVF 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0483 423 Gene3D Jelly Rolls 1 195 IPR014710 -
Aed5g0483 423 SUPERFAMILY RmlC-like cupins 15 381 IPR011051 -
Aed5g0483 423 Coils Coil 162 193 - -
Aed5g0483 423 SMART Cupin_1_3 224 373 IPR006045 -
Aed5g0483 423 SMART Cupin_1_3 12 146 IPR006045 -
Aed5g0483 423 CDD cupin_7S_vicilin-like_C 231 382 - -
Aed5g0483 423 Pfam Cupin 15 91 IPR006045 -
Aed5g0483 423 Pfam Cupin 224 370 IPR006045 -
Aed5g0483 423 PANTHER OS03G0336100 PROTEIN-RELATED 1 395 - -
Aed5g0483 423 PANTHER OS03G0336100 PROTEIN 1 395 - -
Aed5g0483 423 CDD cupin_7S_vicilin-like_N 1 160 - -
Aed5g0483 423 Gene3D Jelly Rolls 217 388 IPR014710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0483 Aed-Chr5 3527889 3530304 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0483 17 394 Miscellaneous Gene Families AT2G18540 31.282 8.46e-43 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0483 - - gmx:547942 654.055
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0483 5 3527889 3530304 Aed5g0483 5 3527889 3530304 ECH
Aed1g1150 1 11229992 11232034 Aed5g0483 5 3527889 3530304 PCT