Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1150 ATGAAGGTTTTGATGTTGTTCCTTGTTCTCTGTCATGGTGTGGCAGTGACAATGGGGACAGAGAGAGAAGACAAGATGTTCTTGATGCAGAAAGCGAAGCGCGTGGCCAAAACCGACGCTGGGGAGATGCGAGTGCTAGAAAACTACGGTGGTAGCATTTCGGAGAGGCGGTTGCACATTGGTTTCATCGATATGGAACCAGGGTCCCTCTTCATTCCTCAGTACCTTGACTCCACTTTTATCATTTTCGTGCGTTCTGGGGAAGCAAAGCTGGGATTCATATATAAAAACAAAAAAAAACTGGGCGAAAGGCATTTGAAGATGGGAGATGTATATCAAATTCCAGCTGGTTCTGCTTTCTATCTCGTCAACATTCAGGACTCTCAAAAGCTTCACATTATCTGCAGCATTGACCCCTCTGAGAGCTTGGGAGTTGATATTTTCCAGTCCTTCTATATTGGAGGAGGGGCCCATCTAGCTTCAATACTTTCTGGATTCGAGCCTGAAATCCTTGAAATTGCTTTTAACGCATCAGGAGAAGAGTTGCGAAAAATCTTCACTAAGAAGCACGAGGGCCCAATTGTGTACGTGGGAGATTCACATGCCACAAGCATATGGACCAAGTTCCTTCAGCTTAAGGAGGAAGACAAACTGCAGCACCTGAGGGAGATGGTGCAACAAGAAGAGGAAGAAGATCAGCAAACAAGTTGGTCGTGGAGGAAGCTCTTGGAATCTATATTTGAGGATGAGATCAAGAACAAGGGGGAGAGGGTTAACAAAAAACCCCCTCACTCATACAATCTCTATGACAGAAAGCCAGATTTCCATAACAGCTATGGTTGGAGCGTTGCTCTAGATGGCTCAGATTATTCACCACTAAAAAGTTCAGGCGTTGGAATTTATCATGTGAATCTCTCAGCGGGATCAATGATGGCACCACACGTGAATCCAAGGGCAACAGAGTATGGAATAGTGCTGAAAGGGTCAGGGAGGATCCAAATAGTGTTTCCAAACGGAAGAAGCGCAATGGACGCGGACATAAAAGAAGGGGACGTGTTCTTCATTCCAAGGTACTTTGCGTTCTGCCAAATAGCATCAAGGACTGAACCACTTGAGTTCTTTGGGTTCACCACCTCGGCGAAGAGGAACAGGCCACAGTTTCTGGTCGGTGCCACGTCACTCGTGAGGACCATGATGGGGCCCGAGCTTGCGGCTGCATTTGGGGTCAGCGAGGAGACCATGAAGCGCGTGGCGAAAGCACAACACGAAGCTGTCATTCTACCAACTCCGTGGGCTGCACCATTGGATACGACACTTCAGAAGCTTACAAGGAATGACAATATGGTTTTGGGCTTTTGA 1359 0.4702 MKVLMLFLVLCHGVAVTMGTEREDKMFLMQKAKRVAKTDAGEMRVLENYGGSISERRLHIGFIDMEPGSLFIPQYLDSTFIIFVRSGEAKLGFIYKNKKKLGERHLKMGDVYQIPAGSAFYLVNIQDSQKLHIICSIDPSESLGVDIFQSFYIGGGAHLASILSGFEPEILEIAFNASGEELRKIFTKKHEGPIVYVGDSHATSIWTKFLQLKEEDKLQHLREMVQQEEEEDQQTSWSWRKLLESIFEDEIKNKGERVNKKPPHSYNLYDRKPDFHNSYGWSVALDGSDYSPLKSSGVGIYHVNLSAGSMMAPHVNPRATEYGIVLKGSGRIQIVFPNGRSAMDADIKEGDVFFIPRYFAFCQIASRTEPLEFFGFTTSAKRNRPQFLVGATSLVRTMMGPELAAAFGVSEETMKRVAKAQHEAVILPTPWAAPLDTTLQKLTRNDNMVLGF 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1150 452 Gene3D Jelly Rolls 258 430 IPR014710 -
Aed1g1150 452 PANTHER OS03G0336100 PROTEIN 1 434 - -
Aed1g1150 452 Pfam Cupin 266 414 IPR006045 -
Aed1g1150 452 Pfam Cupin 53 181 IPR006045 -
Aed1g1150 452 Gene3D Jelly Rolls 19 208 IPR014710 -
Aed1g1150 452 PANTHER OS03G0336100 PROTEIN-RELATED 1 434 - -
Aed1g1150 452 CDD cupin_7S_vicilin-like_C 273 424 - -
Aed1g1150 452 SUPERFAMILY RmlC-like cupins 36 424 IPR011051 -
Aed1g1150 452 CDD cupin_7S_vicilin-like_N 35 197 - -
Aed1g1150 452 Coils Coil 210 231 - -
Aed1g1150 452 SMART Cupin_1_3 25 183 IPR006045 -
Aed1g1150 452 SMART Cupin_1_3 266 415 IPR006045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1150 Aed-Chr1 11229992 11232034 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1150 59 433 Miscellaneous Gene Families AT2G18540 31.510 4.21e-48 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1150 - - gmx:100818796 740.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1150 1 11229992 11232034 Aed1g1150 1 11229992 11232034 ECH
Aed1g1150 1 11229992 11232034 Aed5g0483 5 3527889 3530304 PCT