Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0476 ATGAGAACAACGAACCACTTGATCGGTCTTCTAAACTTCCTAACCTTCCTTCTATCGATTCCGATCCTAGTCGGCGGGATATGGCTGAGCAGCAGAGCCAACAACACCGACTGCCTCAAGTTCCTGCAGTGGCCGCTCATCATCATCGGCGTCAGCATCATGGTGGTGTCGCTAGCGGGGTTCGCCGGCGCGTGCTACCGCAACACCTTCCTCATGCGCCTCTACCTCGTCGTCATGTTCGTCGTCATCGCTGTCCTCATCGGGTTTATAATATTCGCCTACGTCGTCACCGACAAAGGCTCCGGCCGGAGGGTCATGAACCGTGCCTACGTGGAGTACCATCTCGAGGACTATTCGGGGTCGTGGCTGGAGGAGCGCGTGGCGAGTGATAGCTACTGGGGGAAGATCGGTTCGTGTATTCGGGACTCTAAAGTGTGTCCTAAGATGGGGAGAACCATTAATGGCTTCCCCGAAACTCCTGATATGTTCTACCGCAGACATCTCACGCCTATTCAGTCTGGTTGCTGCAAGCCCCCAACAGATTGTGGCTATGTCTATCAGAACGAGACAGTGTGGATCGCAGGAACAGGATTGATGGGAGCAAACCCAGATTGCACTAGGTGGAGCAATGACCAAGAACATCTTTGCTATGCCTGTGATTCATGCAAGGCTGGTGTGCTTGCAAGTCTCAAGAAGAGTTGGAGAAAGGTCTCAGTTATCAACATTGTTGTTATGATCATCCTTGTGTTTGTTTACATTATTGCTTATGCAGCATATAGGAACAACCGCAAGATGGATAACGATGAGTCCTATGGTGAAGCCAGGATGACTAAGTCACAACCTAGTGCCTTTCATCTTTAG 861 0.5087 MRTTNHLIGLLNFLTFLLSIPILVGGIWLSSRANNTDCLKFLQWPLIIIGVSIMVVSLAGFAGACYRNTFLMRLYLVVMFVVIAVLIGFIIFAYVVTDKGSGRRVMNRAYVEYHLEDYSGSWLEERVASDSYWGKIGSCIRDSKVCPKMGRTINGFPETPDMFYRRHLTPIQSGCCKPPTDCGYVYQNETVWIAGTGLMGANPDCTRWSNDQEHLCYACDSCKAGVLASLKKSWRKVSVINIVVMIILVFVYIIAYAAYRNNRKMDNDESYGEARMTKSQPSAFHL 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0476 286 PANTHER TETRASPANIN-3-LIKE 1 280 - -
Aed5g0476 286 Pfam Tetraspanin family 6 254 IPR018499 GO:0016021
Aed5g0476 286 PRINTS Transmembrane four family signature 6 29 - -
Aed5g0476 286 PRINTS Transmembrane four family signature 66 94 - -
Aed5g0476 286 PRINTS Transmembrane four family signature 39 65 - -
Aed5g0476 286 PANTHER TETRASPANIN-8-RELATED 1 280 IPR044991 GO:0009734|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0476 Aed-Chr5 3463914 3470001 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0476 1 278 Miscellaneous Gene Families AT5G60220 71.942 9.23e-129 367
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0476 - - gmx:100788977 537.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0476 5 3463914 3470001 Aed5g0476 5 3463914 3470001 ECH
Aed1g1153 1 11248550 11251965 Aed5g0476 5 3463914 3470001 PCT