Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0467 ATGTTCCGAGTTAATATTCTGACTATTTTCGTCTCATATCCCGCACCAAGAGCTTGTCCGCAAGCAAACTCGATCGAAGGTCTAGCCACGTGTGGCACATCCAAAATCCCACCCATGGAGGAGCAAGGAGTACGTGTACCGCAGGAACCCAAACACTGGAACCAGTTGGGCTGCTCGACAAAACAGAAGGGAGAGAGAGGGAGGGAGGGGCAGTTCCAGCTATTTATCCGCGCAAATGACAGCGACGCGCAAAGGGATAGAGATAGAGAGCCAAAAACCGAAAACGCCATCATCCAAACAGCGCCTTCTCTCTCTTTTAAAAGACACCCTGTGGTATTTCCCTGCCCCTCTAAACTTTTTGCCCTGTTTCTCTCTCTCTCTCCTCTGCTCCGTCTTCGCAAACAATCTCCTCCTCACAGTTTTGTCTTCTCGATCTCACCACTAGCTTTCTTCGCTCTCGTTGCATATTCGATTTCGATTGTCGGTTTTATAATCTGTGTCTGGTGCTGGCACCACATAATGGACATGGCTGAGAAGGATGACACTGAGGGGCGATGCCCCGCATGTCGTTCTGCTTATGATAAGGAAAAGATTGTTGGGATGGCTGCAAACTGTGAGAGATTGGTGAATGGAGTTAATATGGAGAAAAAGATGAAGACTCAGAAAGCTAAGTCTAAATCATTTGATGGGCGTAAGCAGCTCAGCAGTGTGCGAGTGATTCAGAGGAACCTTGTTTACATAGTTGGGTTGCCTCTCAATATTGCAGACGAAGATCTTCTTCAGCGGAGAGATTATTTTAGTCAGTATGGGAAGGTCTTAAAAGTGTCAATGTCTCGAACGGCGGCTGGTGTCATTCAACAGTTTCCGAATGATACCTGCAGTGTATATATAACTTATTCCAAGGAAGAGGAAGCGATTCGTTGTATTCAAAATGTACATGGATTTGTTTTGGAGGGTAGAACTTTAAGGGCTTGTTTTGGAACCACAAAATATTGTCATGCATGGCTCCGAAATGTGCCTTGCAGCAATCCAGATTGTCTATATTTGCATGAGATTGGCTCTCAAGAAGATAGTTTTACCAAGGATGAAATAATTTCAGCATACACTAGAAGTCGAGTTCAGCAAATCACTGGTGCCACAAACAGTATGCAGCGGCGGTCTGGGAATGTATTACCTCCTCCACTGGATGACAATATGAGTGATTCATCTGCAAAGCCTATTGTTAAAAATGCTTCAAAACTCTGTAAGCACTGTAAGAGGTTCACCTCCGAATGGAATATATGGGAGACATATGGCCCTTCCTGCTACTGCTGCATGGGGTACTCAGGCCACAAGTTGTCAGCCCCCTATTGGAGGATCATCATATCCAAATGGGCTGTCCAAGTCCAAACCTGA 1395 0.4552 MFRVNILTIFVSYPAPRACPQANSIEGLATCGTSKIPPMEEQGVRVPQEPKHWNQLGCSTKQKGERGREGQFQLFIRANDSDAQRDRDREPKTENAIIQTAPSLSFKRHPVVFPCPSKLFALFLSLSPLLRLRKQSPPHSFVFSISPLAFFALVAYSISIVGFIICVWCWHHIMDMAEKDDTEGRCPACRSAYDKEKIVGMAANCERLVNGVNMEKKMKTQKAKSKSFDGRKQLSSVRVIQRNLVYIVGLPLNIADEDLLQRRDYFSQYGKVLKVSMSRTAAGVIQQFPNDTCSVYITYSKEEEAIRCIQNVHGFVLEGRTLRACFGTTKYCHAWLRNVPCSNPDCLYLHEIGSQEDSFTKDEIISAYTRSRVQQITGATNSMQRRSGNVLPPPLDDNMSDSSAKPIVKNASKLCKHCKRFTSEWNIWETYGPSCYCCMGYSGHKLSAPYWRIIISKWAVQVQT 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0467 464 CDD RRM_CNOT4 238 337 IPR034261 -
Aed5g0467 464 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 245 323 IPR000504 GO:0003723
Aed5g0467 464 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 243 329 IPR000504 GO:0003723
Aed5g0467 464 SUPERFAMILY RNA-binding domain, RBD 237 323 IPR035979 GO:0003676
Aed5g0467 464 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX RELATED 161 413 IPR039780 GO:0004842|GO:0030014
Aed5g0467 464 Pfam RING/Ubox like zinc-binding domain 162 194 - -
Aed5g0467 464 Gene3D - 244 325 IPR012677 -
Aed5g0467 464 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIF) FAMILY PROTEIN 161 413 - -
Aed5g0467 464 SMART rrm2_1 244 325 IPR003954 GO:0003676
Aed5g0467 464 SUPERFAMILY RING/U-box 162 199 - -
Aed5g0467 464 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 125 210 IPR013083 -
Aed5g0467 464 SMART rrm1_1 244 325 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0467 Aed-Chr5 3375075 3384095 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0467 K10643 - gmx:100801880 484.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0467 5 3375075 3384095 Aed5g0467 5 3375075 3384095 ECH
Aed5g0467 5 3375075 3384095 Aed1g1160 1 11305634 11315124 PCT