Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1160 ATGAGTGATGAAGGAGAAAGGACTTGTCCTCTCTGTGCAGAAGAGATGGATTTGACAGATCAGCAGTTGAAACCATGCAAATGTGGTTATGAGATATGTGTCTGGTGTTGGCATCACATACTGGAAATGGCTGAGAAGGATGACACAGAGGGACGATGCCCTGCATGTCGTTCTCCATATGATAAGGAAAAGATTGTTGGGATGGCTTCAAACTGTGAGAGATTGGTGGCTGAAGTTCATATGGAAAAAAAGATGAAGAACCAGAAAGCAAAGTCAAAATCATCTGAAGCACGGAAGCAGCTCAGTAGTGTGCGAGTAATTCAGCGGAACCTAGTTTACATAGTGGGATTGCCTCTCAATCTGGCAGATGAAGATCTCCTCCAGCAGCGAGAATATTGTGGTCAGTATGGGAAGGTCTTAAAGGTGTCAATGTCTCGGACCACTGCTGGTGTTGTTCAGCAGTTTCCAAACAATACATGTAGTGTATATATTACTTATTCAAAGGAAGAAGAAGCAGTTCGATGCATTCAAAATGTACATGGATTCGTTTTGGAGGGTAGACCTTTAAGGGCTTGTTTTGGAACCACTAAATATTGTCATGCGTGGCTCAGAAACATGCCTTGCAGCAATCCAGATTGTCTATATCTGCATGAGATTGGCTCTCAAGAGGATAGTTTCACAAAAGATGAAATAATTTCAGCATACACTAGAAGTCATGTTCAACAAATTACTGGTGCTGCAAACAATATGCAACGGCGATCAGGGAATGTATTGCCTCCTCCATTGGATGATTGCACGGATAATTCATCAGGGAAACCAATTGTGCAAAACTCATCAAGTATCTCTGTTAGCATTGTAAGAGGTTCACCCCCTCATGGAACTTCTGGGAGACCTATAGCTCTTTCTGCAGATGCATGGGGTACACGGGCTACAAATTGTCAGCCAGCTGCTGGTGGTTTATTATGTCCAAATGGACTGTCCAAGCCTAAACCTGATACAATTAGCAGCACCCTACCCTTTTCTTCTGCTGTTGCAGGCACATTTCAGGCTTCATTAAATAATGATGTGTCAACAAGGCCACTGTCGAGTGATGGGAGTCATAGTATGACACCTCAAGTAAAAAATGAATTATTGAGACCTGTTAAACAAAATAGAAGCATGGATATTGTGGCTACTGCTGGCGAAAGATCTTCTGCTTCTGATGCTTCTCTTTCACCTGTGAAATTTAATAACCAGTTGTCTTCTCTACCATTAGCCAGAGATATTGATAGAGGCAGCTTTACTGCAACAAACACAATAAATTCTATTGACATCACTCGACAGCCATGCAGCATTGGTCCTGAAGAAGCAGTTATTTCTACCAGTGAAGAGATTGAGAATTTGTCCTGTGAGTTGTCATCTGTTTACATTCATAGAAATGCCCAAAATAAACACTGCAGCCTATCCAAAACTAGCAGCTCATCTGATAATGTGTTGGCTAAATCTGTGCAATCTCAAGAATCACAGTATAACACTGACAAATTTAAAGATATAATAAGGATTACAAATGCAGACAGTAAAGCTGCTGTATTAGATAATGAGGTTTATAATTTAAAGGAGCAGTGCGATTTGTCATTGGATTCTCAATCTCAAGTAGTATCAGCTAATACTGAAGTGGAAGATGATGTAACAAGTTTTGATAATCAGAGGCTTAAGGATCCAGAAGTTGTTGGTTCTTATTTGCCAAAGTCAGCCAATTTCCTTCATGTCTCAAATCATTCTAGTCCTCATATTCTGCAGCATGGTGAACCATGTAATGTTGTAAATGCTGGATCTTTAGATGGCAGTGATAAATTTGGGGATAACTCACCATTACCTGCACATAACACATATTCTGCGAAATTGATCAGCACCAGCTCTTATGGGTTCCTCCATGATGCACAGAATGATCAACACATTGGAAGATTAGTTAGTGACTCAGTTAATATTAGAAGTGATGCTGTTATGGACAAGGGTGAGAGTAGTATAATTTCAAATATATTATCCATGGAGTTTGATGCCTGGGATGACTCGCTAATATCACCTGAGAGTCTGGCCAAGTTGTTGGGTGACAACACCGACAAACAGAATGGTCCGTTAAAAAAATCTAGTTCTTGGAAAGTTCAAAGTAACAATCAATCAAGATTTTCTTTTGCAAGACAGGAGGAATCCAAAATCCAAGCCAATGTACATCCATCTTCTGGTGCCAACCAGCTATTTCAAAAGAATGACTCACTCATCCAGGATTTCGTGGAAAGAGACTTTTCTTTGAACCAACTGGGTATTGCAAATGGCTTCCCCTCCAATAACCTTGAGGAATCTGTAAATCTCAGCAGTGGTCATTTTATTGCTTCAAACAATAAGCTTTCTGCTGTTTCAAGAGCACAAACTTCCGCGCCGCCAGGATTTTCTGTTCTGAACAGGGCACCACCTCCTGGTTTCTCTTCTCTTGAGAGAATGGGGCAGGCTTTTGACTCCCTCTCAGGGAATTCATTGCTCAACCCTTCTTTCTTACTGAGAAATTCATATCATACACCCTCAAATGGAAATATTGGTGGTCCAGGAGACATTGAATTTATGGATCCTGCTATTTTGGCAGTTGGTAAAGGGAGAATTCAAGGTGCACGAAACAGCCCAGTGCTGGACATGCGATCCAATTACCCTGAACAGTTAAATTACTTTGAGAATGAGGCTAGAGTTCAATTATTGATGCAAAGATCTCTCTCGCCACAGCAAAACCATCGATTTTCTGAAATTGGGAATTCCTTTTCTCAACTTGGTGATTCTTATGGCATCTCTTCAAGGTTAAATCAATCACAACTTTCACAAGTTAGTAATCTGGCTTCATTTCCTCAGTTGTCTCTGCAGCAGTCTAGAAATGCAGACTTGGCAAATGGTCAATTGGATGGGTGGAATGAAATGCAGAGTGGAAATAGTCTGGGTGTGGCAGAGCTTTTGAGAAATGAAAGACTTGGATTTAACAAATTTTATAGAGGATATGATGATTCAAAATATCGGATGCCAAATTCTATGGATCTGTTCAACAGGACATTTGGGATTTGA 3081 0.4054 MSDEGERTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHILEMAEKDDTEGRCPACRSPYDKEKIVGMASNCERLVAEVHMEKKMKNQKAKSKSSEARKQLSSVRVIQRNLVYIVGLPLNLADEDLLQQREYCGQYGKVLKVSMSRTTAGVVQQFPNNTCSVYITYSKEEEAVRCIQNVHGFVLEGRPLRACFGTTKYCHAWLRNMPCSNPDCLYLHEIGSQEDSFTKDEIISAYTRSHVQQITGAANNMQRRSGNVLPPPLDDCTDNSSGKPIVQNSSSISVSIVRGSPPHGTSGRPIALSADAWGTRATNCQPAAGGLLCPNGLSKPKPDTISSTLPFSSAVAGTFQASLNNDVSTRPLSSDGSHSMTPQVKNELLRPVKQNRSMDIVATAGERSSASDASLSPVKFNNQLSSLPLARDIDRGSFTATNTINSIDITRQPCSIGPEEAVISTSEEIENLSCELSSVYIHRNAQNKHCSLSKTSSSSDNVLAKSVQSQESQYNTDKFKDIIRITNADSKAAVLDNEVYNLKEQCDLSLDSQSQVVSANTEVEDDVTSFDNQRLKDPEVVGSYLPKSANFLHVSNHSSPHILQHGEPCNVVNAGSLDGSDKFGDNSPLPAHNTYSAKLISTSSYGFLHDAQNDQHIGRLVSDSVNIRSDAVMDKGESSIISNILSMEFDAWDDSLISPESLAKLLGDNTDKQNGPLKKSSSWKVQSNNQSRFSFARQEESKIQANVHPSSGANQLFQKNDSLIQDFVERDFSLNQLGIANGFPSNNLEESVNLSSGHFIASNNKLSAVSRAQTSAPPGFSVLNRAPPPGFSSLERMGQAFDSLSGNSLLNPSFLLRNSYHTPSNGNIGGPGDIEFMDPAILAVGKGRIQGARNSPVLDMRSNYPEQLNYFENEARVQLLMQRSLSPQQNHRFSEIGNSFSQLGDSYGISSRLNQSQLSQVSNLASFPQLSLQQSRNADLANGQLDGWNEMQSGNSLGVAELLRNERLGFNKFYRGYDDSKYRMPNSMDLFNRTFGI 1026
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1160 1026 CDD RRM_CNOT4 105 204 IPR034261 -
Aed1g1160 1026 Pfam RING/Ubox like zinc-binding domain 9 61 - -
Aed1g1160 1026 CDD mRING-HC-C4C4_CNOT4 9 58 IPR039515 -
Aed1g1160 1026 Gene3D - 111 192 IPR012677 -
Aed1g1160 1026 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 77 IPR013083 -
Aed1g1160 1026 SUPERFAMILY RING/U-box 3 66 - -
Aed1g1160 1026 SUPERFAMILY RNA-binding domain, RBD 104 190 IPR035979 GO:0003676
Aed1g1160 1026 ProSiteProfiles Zinc finger RING-type profile. 9 57 IPR001841 -
Aed1g1160 1026 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIF) FAMILY PROTEIN 1 1026 - -
Aed1g1160 1026 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 112 190 IPR000504 GO:0003723
Aed1g1160 1026 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 110 196 IPR000504 GO:0003723
Aed1g1160 1026 SMART rrm2_1 111 192 IPR003954 GO:0003676
Aed1g1160 1026 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX RELATED 1 1026 IPR039780 GO:0004842|GO:0030014
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1160 Aed-Chr1 11305634 11315124 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1160 K10643 - gmx:100796804 1748.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0467 5 3375075 3384095 Aed1g1160 1 11305634 11315124 PCT