Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0448 ATGAATCCAGTTCCAATGGAAACATCAAATGTGCAACCACAAGCTGCATCAACAAGCACGCCAAGGAAAAAAATGACAAAGCAATTGACAGGTAAAAGGGATGATACACCTCTGCACTCTGCAGCAAGAGCAGGGAATATGAGTGTTCTTAAAGACGCTGTTAGTGGCACTGAAGAGGGTGAATTGCGTGCGTTGTTAACAACAAAGCAGAACCATGCCGGAGAAACGGTGCTTTATGTTGCTGCTGAATATGGCTATGTTGATATGGTTAGGGAGCTGATTCAATATTATGATCTAGCTGGGGCTGGAATTAAGGCCAGGAATGGTTTTGATGCACTCCACATTGCTGCAAAACAAGGGGATTTAGATATTGTGATGATCCTAATGGAGGCTCATCCTGAATTGTCAATGACTGTGGATCCATCCAACACCACAGCGGTGCACACTGCTGCATTACAAGGGCATACTGAGATAGTGAAGCTTCTATTGGAAGCAGGTAGTAATCTGGCAACCATTGCTAGAAGTAACGGGAAAACGGCTTTGCATTCTGCTGCGAGAAATGGACATTTGGAGGTTGTGAAAGCACTTTTGGAGAAGGAGCCCGCTGTTGCAACGCGGACCGATAAGAAGGGACAAACAGCACTTCACATGGCAGTGAAGGGACAGAGTCTTGAGGTGGTGGAGGAGTTGATAAAAGCTGATCCCTCAACAATAAACATGGTTGATAATAAGGGTAACACGGCATTGCATATAGCAACCAGGAAGGGCAGGGCTCAGATTGTTAAGTTGCTTCTTGGACAGGCAGAAACAGATGCCTTGGTAGTTAACAGATCAGGCGAAACTGCACTAGACACAGCTGAGAAAACTGGGAACTCTGAAGTGAAAGACATTCTCCTTGAGCACGGCGTTCGAAGCGCGAAAGCCATAAAGGGTGGCCAGCCAGCAACAGCCACACGAGAGTTGAAACAAACAGTGAGTGACATAAAGCATGAAGTCCACTACCAGTTGGAACACACGCGCCAAACCAGAAAAGGAGTCCAAGGCATAGCAAAACGCATCAACAAAATGCACGCTGAGGGACTCAACAATGCAATAAACTCAACAACTGTGGTTGCAGTCCTAATTGCCACGGTTGCATTTGCAGCAATCTTCACAGTCCCAGGCCAATTCGCTGATGAGCCATCAGACATCCCTGCAGGTTCAGGAATGACCATTGGTGAAGCAAACATAGCCCCACAACCAGCATTTCTCATTTTCTTTGTGTTTGATTCCATTGCACTCTTCATTTCTCTTGCTGTGGTGGTGGTGCAAACCTCGGTTGTGATCATAGAAAGCAAAGCAAAGAAGCAGATGATGGCCATCATTAACAAGCTAATGTGGTTGGCTTGTGTGCTTATTTCTGTGGCCTTTTTGGCACTGTCGTTTGTAGTGGTGGGGAAGGATCAGAAGTGGCTTGCAATTGGAGTCACCATCATAGGGACTACTATAATGGCCACAACTTTGGGCACCATGAGTTACTGGGTCATTAGGCATCGCATTGAGGCCTCTAATTTAAGGAGCATTCGGAAATCTTCAATGGGAAGCAGGTCAAGGTCTTTTTCAGTGTCTGTTATGTCAGATTCTGAGCTACTGAACAATGAGCGTAAGGTAATGTATGCGATATAG 1665 0.4583 MNPVPMETSNVQPQAASTSTPRKKMTKQLTGKRDDTPLHSAARAGNMSVLKDAVSGTEEGELRALLTTKQNHAGETVLYVAAEYGYVDMVRELIQYYDLAGAGIKARNGFDALHIAAKQGDLDIVMILMEAHPELSMTVDPSNTTAVHTAALQGHTEIVKLLLEAGSNLATIARSNGKTALHSAARNGHLEVVKALLEKEPAVATRTDKKGQTALHMAVKGQSLEVVEELIKADPSTINMVDNKGNTALHIATRKGRAQIVKLLLGQAETDALVVNRSGETALDTAEKTGNSEVKDILLEHGVRSAKAIKGGQPATATRELKQTVSDIKHEVHYQLEHTRQTRKGVQGIAKRINKMHAEGLNNAINSTTVVAVLIATVAFAAIFTVPGQFADEPSDIPAGSGMTIGEANIAPQPAFLIFFVFDSIALFISLAVVVVQTSVVIIESKAKKQMMAIINKLMWLACVLISVAFLALSFVVVGKDQKWLAIGVTIIGTTIMATTLGTMSYWVIRHRIEASNLRSIRKSSMGSRSRSFSVSVMSDSELLNNERKVMYAI 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0448 554 ProSiteProfiles Ankyrin repeat profile. 108 140 IPR002110 GO:0005515
Aed5g0448 554 Gene3D - 8 173 IPR036770 -
Aed5g0448 554 ProSiteProfiles Ankyrin repeat region circular profile. 176 199 - -
Aed5g0448 554 MobiDBLite consensus disorder prediction 1 25 - -
Aed5g0448 554 ProSiteProfiles Ankyrin repeat region circular profile. 244 265 - -
Aed5g0448 554 SUPERFAMILY Ankyrin repeat 37 303 IPR036770 -
Aed5g0448 554 Gene3D - 174 345 IPR036770 -
Aed5g0448 554 ProSiteProfiles Ankyrin repeat profile. 176 208 IPR002110 GO:0005515
Aed5g0448 554 MobiDBLite consensus disorder prediction 1 47 - -
Aed5g0448 554 PANTHER ANKYRIN REPEAT PLANT PROTEIN 12 554 - -
Aed5g0448 554 Pfam Domain of unknown function 359 477 IPR026961 -
Aed5g0448 554 ProSiteProfiles Ankyrin repeat profile. 142 174 IPR002110 GO:0005515
Aed5g0448 554 Pfam Ankyrin repeats (3 copies) 101 169 IPR002110 GO:0005515
Aed5g0448 554 Pfam Ankyrin repeats (3 copies) 176 235 IPR002110 GO:0005515
Aed5g0448 554 Pfam Ankyrin repeats (3 copies) 242 303 IPR002110 GO:0005515
Aed5g0448 554 Pfam Ankyrin repeats (3 copies) 24 96 IPR002110 GO:0005515
Aed5g0448 554 ProSiteProfiles Ankyrin repeat region circular profile. 142 169 - -
Aed5g0448 554 ProSiteProfiles Ankyrin repeat profile. 210 232 IPR002110 GO:0005515
Aed5g0448 554 ProSiteProfiles Ankyrin repeat region circular profile. 210 232 - -
Aed5g0448 554 SMART ANK_2a 108 137 IPR002110 GO:0005515
Aed5g0448 554 SMART ANK_2a 244 274 IPR002110 GO:0005515
Aed5g0448 554 SMART ANK_2a 33 64 IPR002110 GO:0005515
Aed5g0448 554 SMART ANK_2a 210 240 IPR002110 GO:0005515
Aed5g0448 554 SMART ANK_2a 278 308 IPR002110 GO:0005515
Aed5g0448 554 SMART ANK_2a 176 205 IPR002110 GO:0005515
Aed5g0448 554 SMART ANK_2a 142 171 IPR002110 GO:0005515
Aed5g0448 554 SMART ANK_2a 73 102 IPR002110 GO:0005515
Aed5g0448 554 ProSiteProfiles Ankyrin repeat profile. 244 265 IPR002110 GO:0005515
Aed5g0448 554 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 12 554 - -
Aed5g0448 554 ProSiteProfiles Ankyrin repeat region circular profile. 108 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0448 Aed-Chr5 3171384 3176040 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0448 16 554 Miscellaneous Gene Families AT1G07710 71.985 0.0 727
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0448 - - gmx:100808971 947.192
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0448 5 3171384 3176040 Aed5g0448 5 3171384 3176040 ECH
Aed1g1178 1 11457699 11459371 Aed5g0448 5 3171384 3176040 ECH