Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1178 ATGCAGGCAGTAAACAGCAGTAGGAAAAAAATGGCAAAACAATTGACAGGAAAAAGGGATGATACACCTTTGCATTCTGCAGCAAGGGAAGGGAATTTGAGTGTGCTGAAGGATACAATATTGGGAACTGACGAGGCTGAATTGCATGAATTATTAGCGAAGCAGAATCAAGATGGAGAAACGCCACTTTATATTGCTGCTGAATATGGCTCCGCTGATGTAGTTAGGGAGATGATTCAGTATTATGATCTAGTTGATGCTGGAATTAAGGCTAGAAACGGTTTTGATGCACTACACATTGCCGCCAAACAAGGGGATTTAGATGTATTGAAGATCCTAATGGAGAGTCATCCTGAGTTGTCAATGACAGTGGATCCTTCGAACACGACGGCTTTGCACACAGCTGCAAGACAAGGGCACATTGAGATTGTGAGGTTCCTATTGGAAACAGGAAGCAGTCTGGCAGCCATTGCTAGAAGTAATGGAAAAACAGCTCTGCATTCTGCTGCAAGAAATGGACATGTGGTGGTTGTGAAAGCACTTCTAGAGAAGGAGCCGAGCGTGGCAACGCGGACCGATAAGAAGGGACAGACAGCACTTCACATGGCAGTGAAGGGACAGAACATTGAGGTGGTGGAGGAGTTGATCAAATCAGATCCCTCATCAGTAAACATGGTTGATAATAAGGGGAACACACCATTGCATATAGCAACAAGAAAGGGAAGGTCTCAGATTGTAAAACTGCTTCTAGTGCAGAAGGAAGCGGTTACAAGTGCAATGAACAGAGCCGGTGAAACAGCGGTGGACACAGCTGAGAAAACGGGGAGCCATGACGTCAAAGACATTCTTCTTCAACACGGTGTACAGAGTGCAAAGACCATAAAGCCCCCCACACCAGCGGCTACTACAGCCCGAGAGTTGAAACAGACGGTGAGTGACATAAAGCACGAGGTGCACCACCAGTTGGAACACACTCGCCAAACAAGAAAACGCGTTCAAGGAATTGCGAAACGTATCAACAAAATGCACTCGGAAGGACTGAACAATGCAATAAACTCGACAACTGTGGTGGCAGTGCTGATTGCGACAGTGGCCTTTGCTGCTATTTTCACAGTCCCTGGGCAGTTTGTTGATGATCCAGACAACATTCCTCTGGGGATGTCCCTTGGCGAGGCTAACATAGCCCCGCGATTCCCTTTCATCCTTTTCTTTCTCTTTGATTCTGTTGCACTCTTTATCTCTTTGGCTGTCGTCGTCGTGCAAACCTCGGTTGTGGCTATAGAAAGCAAGGCAAAGAAGCAAATGATGGCTGTCATTAACAAGCTCATGTGGCTCGCTTGTGTTCTTATTTCAGTCGCCTTCTTGGCGTTGTCTTTTGTGGTCGTGGGGAAGGAAGAGAGGTGGCTAGCCATAGGAGTCACCATTATTGGAACAACCATAATGGCTACCACGTTGGGAACTATGTGTTACTGGGTCATTAGGCATCGCATTGAGGCCTCTAATTTGAGGAACGATCGCAAATCTTCATTGCATAGCAAAAAGTCTTTTACAGTTTCAGACTCTGAGCTACTAAACAGTGAGTATTATAGGAAAATGTATGCGATTTAG 1608 0.4583 MQAVNSSRKKMAKQLTGKRDDTPLHSAAREGNLSVLKDTILGTDEAELHELLAKQNQDGETPLYIAAEYGSADVVREMIQYYDLVDAGIKARNGFDALHIAAKQGDLDVLKILMESHPELSMTVDPSNTTALHTAARQGHIEIVRFLLETGSSLAAIARSNGKTALHSAARNGHVVVVKALLEKEPSVATRTDKKGQTALHMAVKGQNIEVVEELIKSDPSSVNMVDNKGNTPLHIATRKGRSQIVKLLLVQKEAVTSAMNRAGETAVDTAEKTGSHDVKDILLQHGVQSAKTIKPPTPAATTARELKQTVSDIKHEVHHQLEHTRQTRKRVQGIAKRINKMHSEGLNNAINSTTVVAVLIATVAFAAIFTVPGQFVDDPDNIPLGMSLGEANIAPRFPFILFFLFDSVALFISLAVVVVQTSVVAIESKAKKQMMAVINKLMWLACVLISVAFLALSFVVVGKEERWLAIGVTIIGTTIMATTLGTMCYWVIRHRIEASNLRNDRKSSLHSKKSFTVSDSELLNSEYYRKMYAI 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1178 535 ProSiteProfiles Ankyrin repeat profile. 93 125 IPR002110 GO:0005515
Aed1g1178 535 Gene3D - 156 334 IPR036770 -
Aed1g1178 535 ProSiteProfiles Ankyrin repeat region circular profile. 229 250 - -
Aed1g1178 535 SUPERFAMILY Ankyrin repeat 21 287 IPR036770 -
Aed1g1178 535 ProSiteProfiles Ankyrin repeat profile. 195 217 IPR002110 GO:0005515
Aed1g1178 535 ProSiteProfiles Ankyrin repeat region circular profile. 93 115 - -
Aed1g1178 535 Pfam Ankyrin repeats (3 copies) 88 153 IPR002110 GO:0005515
Aed1g1178 535 Pfam Ankyrin repeats (3 copies) 161 225 IPR002110 GO:0005515
Aed1g1178 535 Pfam Ankyrin repeats (3 copies) 227 289 IPR002110 GO:0005515
Aed1g1178 535 Pfam Ankyrin repeats (3 copies) 1 81 IPR002110 GO:0005515
Aed1g1178 535 Pfam Domain of unknown function 345 461 IPR026961 -
Aed1g1178 535 ProSiteProfiles Ankyrin repeat region circular profile. 58 80 - -
Aed1g1178 535 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 3 535 - -
Aed1g1178 535 ProSiteProfiles Ankyrin repeat profile. 161 193 IPR002110 GO:0005515
Aed1g1178 535 SMART ANK_2a 58 87 IPR002110 GO:0005515
Aed1g1178 535 SMART ANK_2a 195 225 IPR002110 GO:0005515
Aed1g1178 535 SMART ANK_2a 161 190 IPR002110 GO:0005515
Aed1g1178 535 SMART ANK_2a 263 292 IPR002110 GO:0005515
Aed1g1178 535 SMART ANK_2a 229 258 IPR002110 GO:0005515
Aed1g1178 535 SMART ANK_2a 93 122 IPR002110 GO:0005515
Aed1g1178 535 SMART ANK_2a 19 48 IPR002110 GO:0005515
Aed1g1178 535 SMART ANK_2a 127 156 IPR002110 GO:0005515
Aed1g1178 535 ProSiteProfiles Ankyrin repeat profile. 229 250 IPR002110 GO:0005515
Aed1g1178 535 ProSiteProfiles Ankyrin repeat region circular profile. 127 154 - -
Aed1g1178 535 PANTHER ANKYRIN REPEAT PLANT PROTEIN 3 535 - -
Aed1g1178 535 ProSiteProfiles Ankyrin repeat profile. 127 159 IPR002110 GO:0005515
Aed1g1178 535 Gene3D - 2 155 IPR036770 -
Aed1g1178 535 ProSiteProfiles Ankyrin repeat region circular profile. 161 184 - -
Aed1g1178 535 ProSiteProfiles Ankyrin repeat profile. 58 80 IPR002110 GO:0005515
Aed1g1178 535 MobiDBLite consensus disorder prediction 1 29 - -
Aed1g1178 535 ProSiteProfiles Ankyrin repeat region circular profile. 195 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1178 Aed-Chr1 11457699 11459371 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1178 8 535 Miscellaneous Gene Families AT1G07710 73.308 0.0 740
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1178 - - gmx:100791519 898.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1178 1 11457699 11459371 Aed1g1178 1 11457699 11459371 ECH
Aed1g1178 1 11457699 11459371 Aed5g0448 5 3171384 3176040 ECH