Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0422 ATGGCTGCTCCACCAGCAAGGGCTCGTGCCGATTATGATTATCTCATAAAGCTTCTCTTGATCGGTGACAGCGGTGTTGGAAAAAGTTGCCTCCTTCTGCGTTTCTCTGATGGTTCTTTCACCACTAGTTTCATCACAACTATAGGCATTGATTTTAAGATAAGAACCATTGAGCTTGATGGAAAACGGATCAAGCTCCAAATTTGGGATACTGCAGGGCAGGAGCGGTTTCGGACAATTACAACTGCTTACTATCGTGGTGCTATGGGCATATTGCTAGTCTATGATGTTACAGATGAAGCATCATTTAACAATATCAGGAATTGGATTCGCAATATTGAGCAACATGCTTCAGACAATGTTAACAAAATACTGGTCGGGAACAAAGCTGATATGGATGAAAGCAAAAGGGCTGTGCCTACATCCAAGGGTCAAGCTCTGGCTGATGAGTATGGAATCAAATTCTTTGAAACTTCAGGAGGGGCTGGGGAGGCTGCACAAAAATCGGCATGTTGTGGTTGA 522 0.4368 MAAPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSGGAGEAAQKSACCG 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0422 173 SMART ras_sub_4 17 168 - -
Aed5g0422 173 TIGRFAM small_GTP: small GTP-binding protein domain 14 165 IPR005225 GO:0005525
Aed5g0422 173 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 160 IPR027417 -
Aed5g0422 173 ProSiteProfiles small GTPase Ras family profile. 6 173 IPR001806 GO:0003924|GO:0005525
Aed5g0422 173 ProSiteProfiles small GTPase Rho family profile. 9 173 - -
Aed5g0422 173 ProSiteProfiles small GTPase Rab1 family profile. 11 173 - -
Aed5g0422 173 PANTHER LD44762P 1 160 - -
Aed5g0422 173 SMART rho_sub_3 18 173 IPR001806 GO:0003924|GO:0005525
Aed5g0422 173 Gene3D - 9 169 IPR027417 -
Aed5g0422 173 SMART rab_sub_5 16 170 - -
Aed5g0422 173 Pfam Ras family 17 161 IPR001806 GO:0003924|GO:0005525
Aed5g0422 173 CDD Rab8_Rab10_Rab13_like 13 159 - -
Aed5g0422 173 PANTHER BNAA07G37610D PROTEIN 1 160 - -
Aed5g0422 173 PRINTS Transforming protein P21 ras signature 16 37 - -
Aed5g0422 173 PRINTS Transforming protein P21 ras signature 57 79 - -
Aed5g0422 173 PRINTS Transforming protein P21 ras signature 119 132 - -
Aed5g0422 173 PRINTS Transforming protein P21 ras signature 39 55 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0422 Aed-Chr5 2985905 2990183 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0422 K07901 - gmx:100779203 309.301
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0422 5 2985905 2990183 Aed5g0422 5 2985905 2990183 ECH
Aed1g1198 1 11599893 11603938 Aed5g0422 5 2985905 2990183 ECH
Aed1g1198 1 11599893 11603938 Aed5g0422 5 2985905 2990183 PCT