Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1198 ATGGCTGCTCCACCGGCAAGAGCGCGTGCGGATTACGATTATCTTATAAAGCTTCTCTTAATTGGCGATAGTGGTGTTGGAAAGAGTTGCCTTCTCCTACGATTCTCTGATGGTTCTTTCACGACTAGTTTCATCACAACCATAGGCATTGATTTTAAGATAAGAACCATTGAGCAGGATGGAAAACGGATTAAGCTCCAAATTTGGGATACTGCAGGCCAGGAGCGGTTCCGAACAATTACAACTGCTTACTATCGTGGTGCTATGGGCATATTGCTTGTCTATGACGTTACAGATGAATCTTCATTTAACAGAATATTCACCCAGCTTATGCCAATTTCAGATATCAGGAATTGGATACGTAACATAGAGCAACATGCTTCAGACAATGTTAACAAAGTACTGGTGGGGAACAAAGCTGACATGGATGAAAGCAAACGGGTTGTGCCTACCTCGAAGGGCCAAGCACTGGCCGATGAATATGGAATCAAATTCTTTGAAACAAGTGCGAAGACAAATCTAAATGTGGAGGAAGTTTTCTTCTCGATTGCAAAAGATATAAAACAAAGGCTTGCTGACACTGACTCTAAGGCAGAGCCAGCAGGAATTAAAATCAGCAACCAACAAGATCAGGCAACGGCTGGGCAAGTTGCACAAAAGTCAGCTTGCTGTGGTTGA 678 0.4307 MAAPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIEQDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNRIFTQLMPISDIRNWIRNIEQHASDNVNKVLVGNKADMDESKRVVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQRLADTDSKAEPAGIKISNQQDQATAGQVAQKSACCG 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1198 225 Pfam Ras family 17 188 IPR001806 GO:0003924|GO:0005525
Aed1g1198 225 Gene3D - 9 224 IPR027417 -
Aed1g1198 225 TIGRFAM small_GTP: small GTP-binding protein domain 14 180 IPR005225 GO:0005525
Aed1g1198 225 CDD Rab8_Rab10_Rab13_like 13 190 - -
Aed1g1198 225 ProSiteProfiles small GTPase Rho family profile. 9 192 - -
Aed1g1198 225 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 209 IPR027417 -
Aed1g1198 225 SMART ras_sub_4 17 190 - -
Aed1g1198 225 SMART ran_sub_2 21 223 - -
Aed1g1198 225 PANTHER BNAA07G37610D PROTEIN 1 224 - -
Aed1g1198 225 ProSiteProfiles small GTPase Ras family profile. 6 218 IPR001806 GO:0003924|GO:0005525
Aed1g1198 225 SMART rab_sub_5 16 190 - -
Aed1g1198 225 PRINTS Transforming protein P21 ras signature 57 79 - -
Aed1g1198 225 PRINTS Transforming protein P21 ras signature 129 142 - -
Aed1g1198 225 PRINTS Transforming protein P21 ras signature 165 187 - -
Aed1g1198 225 PRINTS Transforming protein P21 ras signature 16 37 - -
Aed1g1198 225 PRINTS Transforming protein P21 ras signature 39 55 - -
Aed1g1198 225 PANTHER LD44762P 1 224 - -
Aed1g1198 225 ProSiteProfiles small GTPase Rab1 family profile. 11 224 - -
Aed1g1198 225 SMART rho_sub_3 18 190 IPR001806 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1198 Aed-Chr1 11599893 11603938 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1198 K07901 - gmx:100800345 391.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1198 1 11599893 11603938 Aed1g1198 1 11599893 11603938 ECH
Aed1g1198 1 11599893 11603938 Aed5g0422 5 2985905 2990183 ECH
Aed1g1198 1 11599893 11603938 Aed5g0422 5 2985905 2990183 PCT