Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0402 ATGGGTCAGGGGCTTAGTTGCAGAGGGAGCCATGAGCATGGCCTATTCCGTGCTGTGCAGCATGGGGACCTAGACACTGTTGCAGCTTTGTTGCAAACTCACCCTTCTCTTTTGAACCACTCCACTGTCTATGACCACCACTCTCCTCTTCATATTGCCGCTGCTAATGGCCAGATCCAGGTTTTATCTTGGCTTTTGGGTGGATCTGTGAATCCAGATGTGTTGAATCGACAAAAGCAGACACCGCTTATGTTGGCTGCAATGCACGGAAAGATAGCCTGTGTGGAAAAGCTTCTTGAAGCTGGTGCTAATGTATTAATGTTTGATGCGTGCTACGGAAGAACCTGCTTGCACTATGCTGCTTACTATGGCCATTCTTCTTGCCTTAAGGCAATTCTTTCTGCTGCTCAATCCAGCCCCGTGGCTGCTTCTTGGGGATTTGCTCGGTTTGTGAATATTAGAGATGGTAGAGGTGCAACACCATTGCATTTGGCTGCTCGTCAAAGACGACCTGAATGTGTACATATTCTATTGTACAGTGGAGCTCTTGTTTCTGCTTCAACTGGAAGATATGGCTGTCCTGGAAGCACTCCTCTTCATCTTGCAGCCAAAGGGGGATCTTTGGATTGTATTCGGGAACTTTTGGCATGGGGTGCAGATCGCCTTCAACGTGATGCCTCTGGGCGAATACCATATGTAGTAGCTCTGAAACATAAACATGGGGCATGTGCAGCATTGCTGAATCTTTCAGCTGCTGAGCCTCTTGTATGGCCATCATCTTTGAGGATCATCAGTGAGCTTAATCCGGACGCTAAAGAATTATTAGAGCGTGCCCTGATGGATGCAAACAGGGAAAGGGAGAAAAACATATTGAAAGGGAATGATTGCTCTCTTCCATCTCCATCACATTCTGATGGGGTAGATGACAATTTCTCTGAGGTTAGTGAGACAGAATTATGCTGCATCTGCTTTGAGCAAGTGTGCACAATTGAAGTCCAAGACTGTGGCCACCAAATGTGTGCACAATGCACACTAGCCCTGTGTTGTCACAACAAGCCTAACCCTTCTACTTCTCGTGTTATCCCACCAGTTTGTCCATTCTGCCGAAGCAGCATAGCAAGGTTGATGGTTGTCAAAAAAGAAAGCTCTGATGCCATTGATCAAGATGGTGTTGATATCACTTGTTCCAAGCATTGCAAGTCAAGGAAATCACGAAACTTGAATGAGGGTGGTAGTAGCAGCATCAAGGGAATATCGAATGTGAACTCATTTGGAAAAATGGGTGGTCGCAGCTCTGGAAAATTTGCTGCTGAAAATGAGTGGGAAGATGATAAGCAACAGTGA 1344 0.4613 MGQGLSCRGSHEHGLFRAVQHGDLDTVAALLQTHPSLLNHSTVYDHHSPLHIAAANGQIQVLSWLLGGSVNPDVLNRQKQTPLMLAAMHGKIACVEKLLEAGANVLMFDACYGRTCLHYAAYYGHSSCLKAILSAAQSSPVAASWGFARFVNIRDGRGATPLHLAARQRRPECVHILLYSGALVSASTGRYGCPGSTPLHLAAKGGSLDCIRELLAWGADRLQRDASGRIPYVVALKHKHGACAALLNLSAAEPLVWPSSLRIISELNPDAKELLERALMDANREREKNILKGNDCSLPSPSHSDGVDDNFSEVSETELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPSTSRVIPPVCPFCRSSIARLMVVKKESSDAIDQDGVDITCSKHCKSRKSRNLNEGGSSSIKGISNVNSFGKMGGRSSGKFAAENEWEDDKQQ 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0402 447 Gene3D - 9 142 IPR036770 -
Aed5g0402 447 SUPERFAMILY Ankyrin repeat 15 247 IPR036770 -
Aed5g0402 447 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 303 387 IPR013083 -
Aed5g0402 447 ProSiteProfiles Ankyrin repeat region circular profile. 157 182 - -
Aed5g0402 447 ProSiteProfiles Ankyrin repeat region circular profile. 78 105 - -
Aed5g0402 447 SUPERFAMILY RING/U-box 314 375 - -
Aed5g0402 447 MobiDBLite consensus disorder prediction 406 427 - -
Aed5g0402 447 Pfam Ankyrin repeats (many copies) 194 232 IPR002110 GO:0005515
Aed5g0402 447 PANTHER HOMEOBOX PROTEIN WARIAI 1 443 - -
Aed5g0402 447 ProSiteProfiles Ankyrin repeat profile. 78 110 IPR002110 GO:0005515
Aed5g0402 447 ProSiteProfiles Ankyrin repeat profile. 157 189 IPR002110 GO:0005515
Aed5g0402 447 MobiDBLite consensus disorder prediction 403 447 - -
Aed5g0402 447 Gene3D - 143 250 IPR036770 -
Aed5g0402 447 ProSiteProfiles Ankyrin repeat region circular profile. 194 220 - -
Aed5g0402 447 Pfam Ankyrin repeats (3 copies) 112 184 IPR002110 GO:0005515
Aed5g0402 447 Pfam Ankyrin repeats (3 copies) 15 109 IPR002110 GO:0005515
Aed5g0402 447 ProSiteProfiles Ankyrin repeat region circular profile. 45 77 - -
Aed5g0402 447 ProSiteProfiles Ankyrin repeat profile. 194 226 IPR002110 GO:0005515
Aed5g0402 447 ProSiteProfiles Ankyrin repeat profile. 45 77 IPR002110 GO:0005515
Aed5g0402 447 ProSiteProfiles Zinc finger RING-type profile. 320 369 IPR001841 -
Aed5g0402 447 SMART ANK_2a 112 142 IPR002110 GO:0005515
Aed5g0402 447 SMART ANK_2a 78 107 IPR002110 GO:0005515
Aed5g0402 447 SMART ANK_2a 157 186 IPR002110 GO:0005515
Aed5g0402 447 SMART ANK_2a 194 223 IPR002110 GO:0005515
Aed5g0402 447 SMART ANK_2a 10 39 IPR002110 GO:0005515
Aed5g0402 447 SMART ANK_2a 45 74 IPR002110 GO:0005515
Aed5g0402 447 PANTHER UBIQUITIN-PROTEIN LIGASE XBAT31, PUTATIVE-RELATED 1 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0402 Aed-Chr5 2855779 2859279 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0402 12 330 Miscellaneous Gene Families AT5G60070 27.003 1.71e-18 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0402 - - gmx:100800611 885.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0402 5 2855779 2859279 Aed5g0402 5 2855779 2859279 ECH
Aed1g1213 1 11699734 11703130 Aed5g0402 5 2855779 2859279 PCT