Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1213 ATGGGTCAGAGGCTGAGTTGCAGCGGCAAGCATGAGCACGGGCTCTTCACCGCCGTGCAGCACGGTGAGCTCGAAATTGTGACTAGTCTATTGGAGTCCGACCCATCTCTCTTGCACCAAACCACTCTCTACGATCGCCACTCTCCTCTTCATATTGCCGCTGCCAATGACCAGATCGAGATTCTCTCTAGGCTCTTAGATGGATCTCTTATCCCAGATGTTTTAAATCGCCACAAACAGACTCCGCTTATGTTGGCTGCAATGCACGGGAACATCTCCTGTGTTCAGAAGCTTCTCCAAGCCGGAGCTAATGTTTTGATGTTTGATACTATTTACGGGAGAACCTGCTTACACTATGCCGCTTACTACGGCCATTCTTCTTGCCTTAAGGCTATTCTTTCCGCTGCTCAATCTAGTCCAGTGGCTGCTTCTTGGGGTTTTGCTCGCTTTGTGAATATCAGAGATGGAAAAGGTGCAACGCCATTGCACTTGGCGGCTCGTCAGAGACGGTCTGAATGTGTACATATTCTATTAGACAGTGGAGCTCTTGTTTGTGCTTCAACTGGTGGATATGGTTGTCCTGGGAGCACTCCTCTTCATCTAGCAGCTAGAGGGGGATCTCTGGATTGCATTCGTGAATTGTTGGCATGGGGTGCAGATCGTCTTCAACGCGATGCATCTGGGCGGATACCATATATGGTTGCTCTGAAACACAGACATGGAGCCTGTGCATCATTGCTAAATCCTACATCTGCAGAACCTCTTGTCTGGCCGTCCCCATTGAAGTTCATCAGTGAGCTTAATCCTGAAGCCAAAGCTTTATTAGAACAGGCCTTGATGGATGCAAACAGAGAAAGAGAGAAAAACATATTGAAAGGGAGTTCTTACTCTCTTCCATCTCCATCACATTCTGATGGGGTAGCTGATAATATGTCTGAGGTTAGTGAGTCCGAATTATGTTGTATCTGCTTTGAGCAGGTGTGCACAATTGAAGTTCAGAACTGTGGGCACCAGATGTGTGCACAATGCACACTAGCCCTGTGTTGCCACAACAAGCCCAACCCTGCCACATCATGTCTTACTCCACCAGTTTGTCCATTTTGTCGAAGCACCATAACAAGACTCGTGATTGTGAAGACAGAATGCCATGATGAAACTGATCAAGACAGTGTTGATATCAATTGTTCAAAGCTGAGCAAGTCATCAAGGAAACTCAGAAACAACTTGAATGACAGTGGTAGCAGCAGCTTCAAGGGACTATCTAGTGTTAGTTCATTCGGGAAATTGGGTAGCCGCAGCTCTGGAAGGATTGCTGCTGAGTGGCTCGATAAACAGTGA 1338 0.4716 MGQRLSCSGKHEHGLFTAVQHGELEIVTSLLESDPSLLHQTTLYDRHSPLHIAAANDQIEILSRLLDGSLIPDVLNRHKQTPLMLAAMHGNISCVQKLLQAGANVLMFDTIYGRTCLHYAAYYGHSSCLKAILSAAQSSPVAASWGFARFVNIRDGKGATPLHLAARQRRSECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSLDCIRELLAWGADRLQRDASGRIPYMVALKHRHGACASLLNPTSAEPLVWPSPLKFISELNPEAKALLEQALMDANREREKNILKGSSYSLPSPSHSDGVADNMSEVSESELCCICFEQVCTIEVQNCGHQMCAQCTLALCCHNKPNPATSCLTPPVCPFCRSTITRLVIVKTECHDETDQDSVDINCSKLSKSSRKLRNNLNDSGSSSFKGLSSVSSFGKLGSRSSGRIAAEWLDKQ 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1213 445 PANTHER HOMEOBOX PROTEIN WARIAI 1 445 - -
Aed1g1213 445 PANTHER UBIQUITIN-PROTEIN LIGASE XBAT31, PUTATIVE-RELATED 1 445 - -
Aed1g1213 445 ProSiteProfiles Zinc finger RING-type profile. 320 369 IPR001841 -
Aed1g1213 445 ProSiteProfiles Ankyrin repeat region circular profile. 157 182 - -
Aed1g1213 445 SUPERFAMILY Ankyrin repeat 13 250 IPR036770 -
Aed1g1213 445 Pfam Ankyrin repeats (many copies) 195 234 IPR002110 GO:0005515
Aed1g1213 445 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 306 378 IPR013083 -
Aed1g1213 445 Gene3D - 145 197 IPR036770 -
Aed1g1213 445 ProSiteProfiles Ankyrin repeat profile. 45 77 IPR002110 GO:0005515
Aed1g1213 445 SMART ANK_2a 10 39 IPR002110 GO:0005515
Aed1g1213 445 SMART ANK_2a 112 142 IPR002110 GO:0005515
Aed1g1213 445 SMART ANK_2a 194 223 IPR002110 GO:0005515
Aed1g1213 445 SMART ANK_2a 227 256 IPR002110 GO:0005515
Aed1g1213 445 SMART ANK_2a 78 107 IPR002110 GO:0005515
Aed1g1213 445 SMART ANK_2a 45 74 IPR002110 GO:0005515
Aed1g1213 445 SMART ANK_2a 157 186 IPR002110 GO:0005515
Aed1g1213 445 Pfam Ankyrin repeats (3 copies) 15 109 IPR002110 GO:0005515
Aed1g1213 445 Pfam Ankyrin repeats (3 copies) 112 183 IPR002110 GO:0005515
Aed1g1213 445 MobiDBLite consensus disorder prediction 406 433 - -
Aed1g1213 445 SUPERFAMILY RING/U-box 314 374 - -
Aed1g1213 445 ProSiteProfiles Ankyrin repeat profile. 194 226 IPR002110 GO:0005515
Aed1g1213 445 Gene3D - 198 251 IPR036770 -
Aed1g1213 445 ProSiteProfiles Ankyrin repeat profile. 78 110 IPR002110 GO:0005515
Aed1g1213 445 Gene3D - 8 144 IPR036770 -
Aed1g1213 445 ProSiteProfiles Ankyrin repeat profile. 157 189 IPR002110 GO:0005515
Aed1g1213 445 ProSiteProfiles Ankyrin repeat region circular profile. 78 105 - -
Aed1g1213 445 ProSiteProfiles Ankyrin repeat region circular profile. 194 220 - -
Aed1g1213 445 MobiDBLite consensus disorder prediction 406 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1213 Aed-Chr1 11699734 11703130 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1213 12 225 Miscellaneous Gene Families AT3G12360 33.484 9.41e-18 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1213 - - gmx:100786708 837.025
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1213 1 11699734 11703130 Aed1g1213 1 11699734 11703130 ECH
Aed1g1213 1 11699734 11703130 Aed5g0402 5 2855779 2859279 PCT