Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g2441 ATGGCACCCTCTATTGTTTTCTCTCTACTATCCCTTCTGCTGGTTTCAACTTGTTGTTATGTGCAACCCCTTGAAGAGGGTTTCATCTCTGGGGTCATATCTGACAAGGGTCTTGAATATGCCAAGGAGTTGCTGATAGAAAAAGGTATCGCCTCCATTGTTATGCTTCAGCTGCCAGAGATTGAGAATTCTGCCCAAGTGCCTCTTGTTGGAAATGCTAAAGTGGTTCTTTCTGACATCACAATCAAGGATGTTCAAGTCAATTCTTCATCTGTTAAGACTGGAGAGAGTGGTATTGTTCTAGTGATTTCAGGTGCCATTGCTAATTTGAGTATGAGGTGGAAGTACACTATCAGCTCGTGGTTAATCCCAATTGGAATTTCAGATAGTGGAAGTGCTTCAGTGACGTTGGCTCTCTTAGATTATGGTTGTTATGTGGGAGACTTGTCTATAAAGGTGGACGGTGGTGCATCTTGGCTTTACCAATTTCTGGTAGATGTTTTTGAAGAGGATATAGCATCTGCAGTTGAAGTGGGCATTTCAAAGAAAATAAAAGATGGGATAGTGAATCTTGATAATGTATTGAAATCTCTTCCAGAGCAGATCTCACTAGACAAAACTGCTGCACTAAATGTTTCTTTTGTTGGCACACCTGTGTTGAGTAATTCCTCTATTGCAATTGCAATTAATGGCTTATTCACAGGTAGAAATGAAGTTTTAGTACCTCAAAGTTACCAGAAAGGAATGAAGATTTCTGCTGCCTGTGGTGGTTTACAAAAGATGATAAAGGTTTCAATACATGAAAATGTGTTCAAATCTGCTTCCCTAGTTTACTACAATGCAGGTAAAATGCAATTGATTATTGATAAACTGCCTGATCAGGACATTTTGAACACTGCTGAGTGGAGATTCATAGTTCCCCAATTATACAAGAGATATCCAAATGATGACATGCAGCTTAATATCTCTTTATCTTCTCCACCAGTTATACAAGTGACCTACCAAGATATTAGTGCAACTATTTTTGTAGATATAACAATTGATGTTCTGGAAGATGGTGAAGTCATACCTGTTGCATGCATCTCAGTGGAAATTAGTGCTTCATGTGCTGTGGAAATTGAAGGAAACAACATTGCTGGTTGGCTCAGATTACAAACATTTTCTGCATACTTGAAGTGGAGCAAAATAGGGAAACTGCACGTGCATCTGATCCAGTCACTGATGTCAAGTGTGCTAAAAACTGTGGTCCTTCCATACCTGAACTTGAAATTAAAGAGAGGATTCCCATTACCAATTATTGATGGTTATGGCTTTCAGAATGCTAATATCTTGTACAATCATCCATGGATTATGGTGTGTAGTGATGTTTCCTTCTTCGAAGATTACTATCTAGGTCAACAGTTAGCTTATGTTACATAA 1419 0.3869 MAPSIVFSLLSLLLVSTCCYVQPLEEGFISGVISDKGLEYAKELLIEKGIASIVMLQLPEIENSAQVPLVGNAKVVLSDITIKDVQVNSSSVKTGESGIVLVISGAIANLSMRWKYTISSWLIPIGISDSGSASVTLALLDYGCYVGDLSIKVDGGASWLYQFLVDVFEEDIASAVEVGISKKIKDGIVNLDNVLKSLPEQISLDKTAALNVSFVGTPVLSNSSIAIAINGLFTGRNEVLVPQSYQKGMKISAACGGLQKMIKVSIHENVFKSASLVYYNAGKMQLIIDKLPDQDILNTAEWRFIVPQLYKRYPNDDMQLNISLSSPPVIQVTYQDISATIFVDITIDVLEDGEVIPVACISVEISASCAVEIEGNNIAGWLRLQTFSAYLKWSKIGKLHVHLIQSLMSSVLKTVVLPYLNLKLKRGFPLPIIDGYGFQNANILYNHPWIMVCSDVSFFEDYYLGQQLAYVT 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g2441 472 SUPERFAMILY Bactericidal permeability-increasing protein, BPI 33 222 IPR017943 GO:0008289
Aed4g2441 472 PIRSF Lipid_binding_protein 6 461 IPR030675 GO:0005615|GO:0008289
Aed4g2441 472 SMART bpi2_2 256 455 IPR001124 GO:0008289
Aed4g2441 472 Gene3D - 36 196 - -
Aed4g2441 472 PANTHER LBP/BPI/CETP FAMILY, CARBOXY-TERMINAL DOMAIN PROTEIN 1 471 - -
Aed4g2441 472 Pfam LBP / BPI / CETP family, C-terminal domain 259 445 IPR001124 GO:0008289
Aed4g2441 472 Gene3D - 32 444 - -
Aed4g2441 472 PANTHER OS06G0309200 PROTEIN 1 471 IPR045897 -
Aed4g2441 472 SUPERFAMILY Bactericidal permeability-increasing protein, BPI 224 458 IPR017943 GO:0008289
Aed4g2441 472 Pfam LBP / BPI / CETP family, N-terminal domain 37 190 IPR017942 GO:0008289
Aed4g2441 472 CDD BPI2 261 457 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g2441 Aed-Chr4 26589584 26594713 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g2441 K05399 - gmx:100815362 846.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g2441 4 26589584 26594713 Aed4g2441 4 26589584 26594713 ECH
Aed4g2441 4 26589584 26594713 Aed3g2549 3 27734866 27739287 PCT