Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2549 ATGGTTATGGCACCCTCAATTTGTTTTCTTTTTCTTCTTCTTACATCCCTTCTGTTCCTTTCATCCTCCACCACTGGTGATCTCCAACATCATGAAGAGGGTTTCATCTCTGTGGTCATATCTGAAAAGGGCCTTGATTTTGCCAAGGATATTCTGATAGACCAAGCTGTTGACTCTATTGTTCTGTCTCAGCTGCCACAGATTGAGAAGACTGTGCAAGTCCCTCTCGTTGGGAAAGCCAAAGTTGTTCTTTCTGACATCACTATCAATCACATCCAAGTTAATTCTTCATCTGTTAATACTGGAGAGACAGGCATTGCTCTTGTAGTTTCAGGTGCCACTGCAGACTTGACTTTGAACTGGAGGTACTCTGTTAGCAGTTGGTTAATCCCAATTGGAATTTCCGACAGTGGAACCGCTACTGTAAAGGTTAATGATTTGCAAGTGGGACTTACTTTGAATTTAAGGAACCAAGAAGGAACTCTTAAGTTGATTCTCCTGGATTCAGGATGCCATGTTAGAGATTTATCTATAAAGATGCATGGTGGAGCAGCTTGGCTTTACCAAGTTGTGGGACCTGAAACTGGGAGGCCAGACAAGAGTGTTTCAGTTATCTTCTGCAACAAAAACTTTTCTGGGGAATATGAAGCTATATTTCTATATTATTGCAGGCTAGTAGATGCTTTTGCTGGAAATATAGCATCTGCAGTTGAAGATGCAATTTCTAAAAAAATAAATGAGGGGATAGCAACTCTTGACTTTTTACTGCAATCTCTTCCAAAGACAATCTCATTAGACAAAACTGCTGCTCTAAATGTTTCTTTCGTGGACAATCCCGTGCTGAGTGATTCTGCTATTGAATTAGAAATTAATGGTTTATTCACAGGGAGAAATGAAGTTTTGGTACCTCAAACTTACAGCAGAGGATCAGACCTTTCTGTTTCCTCTGGTGGCAGTTCACCAAAGATGATAACAATTTCATTACATGAAAATGTTTTCAAATCCGGTTCCTTGGTTTACTTCTCTGCAGATAGTATGCAATGGATTGTTGATGAACTACCTGATCAGGCCCTTTTGAACACTGCTGAATGGAGATTCCTTATTCCTCAGTTATACAAAAAATATCCAAATGATGACATGATTCTTAATATCTCTGTATCTTCTCCACCGGATATACAAGTGACAAACAAAGATGTCGGTGTCAACATTTTCATAGATATAACAATTGATGTTCTCGAAGATGGTGAAGTCATACCTGTTGCATGCATCTCGGTGGATTTTAGTGCCTCTGGTGCTGTGGAAATCGTAGGAAACAATCTTGCTGGTTGGCTCAAATTGAGAAAGTTTTCCACAGACTTGAAATGGAGCAAAATAGGGAAATTGCACATGAATCTGATTCAGTCAGTGACATCAACCGTCCTCAAAACTGTCCTCATACCATACTTGAACTCACAGTTATTGAGGGGAATGCCGCTGCCAATTCTTAATGGTTTTTCCATTGAGAATGCTCGTATATTATATGCTTCCCCATGGATTACTGTGTGTAGTGATGTTTCTTTCTTAGGAAACTACTATCTCAAACAACAACCAGCTTATGTATCATAA 1605 0.3944 MVMAPSICFLFLLLTSLLFLSSSTTGDLQHHEEGFISVVISEKGLDFAKDILIDQAVDSIVLSQLPQIEKTVQVPLVGKAKVVLSDITINHIQVNSSSVNTGETGIALVVSGATADLTLNWRYSVSSWLIPIGISDSGTATVKVNDLQVGLTLNLRNQEGTLKLILLDSGCHVRDLSIKMHGGAAWLYQVVGPETGRPDKSVSVIFCNKNFSGEYEAIFLYYCRLVDAFAGNIASAVEDAISKKINEGIATLDFLLQSLPKTISLDKTAALNVSFVDNPVLSDSAIELEINGLFTGRNEVLVPQTYSRGSDLSVSSGGSSPKMITISLHENVFKSGSLVYFSADSMQWIVDELPDQALLNTAEWRFLIPQLYKKYPNDDMILNISVSSPPDIQVTNKDVGVNIFIDITIDVLEDGEVIPVACISVDFSASGAVEIVGNNLAGWLKLRKFSTDLKWSKIGKLHMNLIQSVTSTVLKTVLIPYLNSQLLRGMPLPILNGFSIENARILYASPWITVCSDVSFLGNYYLKQQPAYVS 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2549 534 PANTHER OS06G0309200 PROTEIN 10 191 IPR045897 -
Aed3g2549 534 PANTHER OS06G0309200 PROTEIN 221 534 IPR045897 -
Aed3g2549 534 Pfam LBP / BPI / CETP family, N-terminal domain 44 190 IPR017942 GO:0008289
Aed3g2549 534 Gene3D - 244 522 - -
Aed3g2549 534 SMART bpi2_2 318 523 IPR001124 GO:0008289
Aed3g2549 534 SUPERFAMILY Bactericidal permeability-increasing protein, BPI 285 520 IPR017943 GO:0008289
Aed3g2549 534 Gene3D - 52 197 - -
Aed3g2549 534 PIRSF Lipid_binding_protein 201 524 IPR030675 GO:0005615|GO:0008289
Aed3g2549 534 PIRSF Lipid_binding_protein 11 195 IPR030675 GO:0005615|GO:0008289
Aed3g2549 534 PANTHER LBP/BPI/CETP FAMILY, CARBOXY-TERMINAL DOMAIN PROTEIN 10 191 - -
Aed3g2549 534 PANTHER LBP/BPI/CETP FAMILY, CARBOXY-TERMINAL DOMAIN PROTEIN 221 534 - -
Aed3g2549 534 SUPERFAMILY Bactericidal permeability-increasing protein, BPI 38 191 IPR017943 GO:0008289
Aed3g2549 534 Pfam LBP / BPI / CETP family, C-terminal domain 320 518 IPR001124 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g2549 Aed-Chr3 27734866 27739287 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g2549 K05399 - gmx:100804747 835.099
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g2549 3 27734866 27739287 Aed3g2549 3 27734866 27739287 ECH
Aed4g2441 4 26589584 26594713 Aed3g2549 3 27734866 27739287 PCT