Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g2357 ATGGGTGGTGGAAATCAAGAGGCACTCAAGCAGCTGCAGTCCCTGGTGGAAAAAGTGGATGATGAGCAGCTGAAGAACACATTCCAGAGCATGCACCAGGGTTATCCAACGGAATTGTTAATACGGTTTCTCAAAGCAAGGGACTGGAATGTTGCCAAAGCCCATAAAATGTTAACTGATTGTTTGAACTGGAGAGTGGAAAATGAGATTGACAAAGTTTTAACGAAGCCTATTCCTGCGGATTTGTACAGAGCCATACGGGATTCACAACTCATAGGAATGTCTGGTTACTCAAAGGAGGGTCTACCGGTCATTGCTGTTGGTGTTGGACTCAGTACATACGATAAAGCATCTGACAAATACTATATACAATCACACATCCAACTGAATGAATATAGGGATCGAGTGATCTTGCCAACAGCTATGAGGAAGCATGGACGATACATTGGCACCTGTTTGAAAGTCTTGGATATGACTGGTTTGAAATTTTCAGCACTGAGCCAATTGAGGTTGTTGACTGCTATATCTACAATAGATGACTTGAACTACCCGGAAAAGACAGACACATACTATATTGTTAATGCACCATATGTATTCTCAGCATGTTGGAAGGTTGTAAAGCCTCTTTTGCAAGAAAGAACAAGGAAGAAAATCCAGGTGCTGCAAGGTTGTGGGAAGGAGGAATTACTGAAGGTAATGGACTATGCATCCCTCCCACACTTCTGCAGAAAAGAAGATTCTAAGTCATCCAAACATCATGCATCAGGAAACACTGAAAATTGTTTCGCCTTCAATCATGACTTCCATCAACAACTCTACAATCACATCAAGCAACAAACTATGTTTATGGAGTCAATCTCACCAATCAGACAAGGGTCCTTCTACGTAGACATACCAGAGCCAGATCCTGATGATGCCAAAATAGCCAAGACCATAGAAACCGAGTTCCACAAATTGGAGAATCAGAAGAATGGCTTTACCAACTCACTAAATGGTCTTACAGTTAATGGCCATTGA 1017 0.4179 MGGGNQEALKQLQSLVEKVDDEQLKNTFQSMHQGYPTELLIRFLKARDWNVAKAHKMLTDCLNWRVENEIDKVLTKPIPADLYRAIRDSQLIGMSGYSKEGLPVIAVGVGLSTYDKASDKYYIQSHIQLNEYRDRVILPTAMRKHGRYIGTCLKVLDMTGLKFSALSQLRLLTAISTIDDLNYPEKTDTYYIVNAPYVFSACWKVVKPLLQERTRKKIQVLQGCGKEELLKVMDYASLPHFCRKEDSKSSKHHASGNTENCFAFNHDFHQQLYNHIKQQTMFMESISPIRQGSFYVDIPEPDPDDAKIAKTIETEFHKLENQKNGFTNSLNGLTVNGH 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g2357 338 Gene3D - 4 283 IPR036865 -
Aed4g2357 338 SMART sec14_4 86 247 IPR001251 -
Aed4g2357 338 SMART CRAL_TRIO_N_2 36 61 IPR011074 -
Aed4g2357 338 Coils Coil 5 25 - -
Aed4g2357 338 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 79 250 IPR001251 -
Aed4g2357 338 PANTHER - 1 337 - -
Aed4g2357 338 Pfam CRAL/TRIO domain 90 241 IPR001251 -
Aed4g2357 338 PANTHER OS09G0258000 PROTEIN 1 337 - -
Aed4g2357 338 CDD SEC14 83 241 IPR001251 -
Aed4g2357 338 SUPERFAMILY CRAL/TRIO domain 81 241 IPR036865 -
Aed4g2357 338 Pfam CRAL/TRIO, N-terminal domain 8 60 IPR011074 -
Aed4g2357 338 SUPERFAMILY CRAL/TRIO N-terminal domain 7 76 IPR036273 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g2357 Aed-Chr4 25967809 25972574 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g2357 30 323 Acyl Lipid Metabolism Gene Families AT1G55840 69.153 3.37e-161 450
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g2357 - - gmx:100817955 639.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g2357 4 25967809 25972574 Aed4g2357 4 25967809 25972574 ECH
Aed4g2357 4 25967809 25972574 Aed3g2602 3 28000386 28000833 PCT