Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1955 ATGGAACCACATGTACTTGTTCTTGCTATGGTGAATTGGCTGTTAGTTGTGACGGTGGCAATAAGGCTGCAAGTGGTGGTGTTGTTAGCTAGGGACCCCACAATGGTTTTTCTTTGTGGATTTGGAGGTAATATTCTTGGGGGGATGTTCTGTAACTTTGAAGCTGAATTAAGAGGTTATAGGAAGATCAGGGTCGATTCGGACTCACAGATTGGTTTCATTTCAAAGGTTAACACGTCAAAGCTGGCACGTAAACGGGAGACTGGAAGACTTCAACTCTTTCATTCATCACCATCCTTCAATCCTCATTCATTGATTTTTCCTTTACTCTCCAAATTTAGTTCCACCAACAATCTATTGCAGATGGGTTATGAGTATATTTTGGGAGGGATTATTGCTTCTAGTTTGGTGCTTGTGTTTGTTCTATACGGTTCTGCAACAAAGACGAAGGCCAAAGGTTCAGTACATGCAGAAAGTACAATCATAAGAACATCATCAGAAAATGGAAACCACCACCAAGAAATCTCAGAAACTACGGATATCATCATTGTCGGTGCTGGAGTTGCTGGCGCAGCCCTTGCTTACACACTTGGCAAGGAAGGAAGGCGAGTGCATGTTATTGAAAGGGACTTGAGTGAACCAGACAGGATTGTGGGGGAATTGCTACAACCTGGGGGTTATCTCAAGTTAATTGAATTGGGTCTCCAAGATTGTGTGGGTGATGAGATTGATGCTCAGCAAGTCTTTGGCTATGCTCTTTACAAGGATGGCAAAAATACTAAGCTTTCTTACCCCTTGGAAAAATTTGCCTCTGATGTTTCTGGAAGAAGCTTTCACAATGGCCGTTTCATACAGGGGATGCGAGACAAGGCTTCATCTCTTCCAAATGTAAAATTAGAAGAAGGAACTGTGACATCTCTACTAGAAGAAAATGGAATCATCAAAGGGGTACACTACAAAACCAAGAGTGGACAAGAGGTCGCAGCTAAGGCTCCCCTCACCATAGTATGCGATGGCTGTTTTTCCAACTTGAGACGTTCTCTTTGCAACCCCAAGCCAGTGGCATCTACAATAAACACACTAGCTGGGGCATTATATAAGGTTTTTTGTGCGTCCCCTGACCCAGCTAGTAAGGAAATGCGTCAAGCATGTTTTGATTATTTAAGCCTTGGAGGTGTTTTCTCTGATGGACCAATAGCTTTACTCTCTGGTCTAAATCCTCGTCCATTAAGCTTGGTTCTCCACTTCTTTGCTGTGGCTATATATGGTGTTGGTCGCTTACTCATACCATTTCCTTCTATAAAACGCATGTGGATTGGAGCTAGATTGATTTCCGGTGCCTCTGCTATCATTTTCCCCATTATCAAGGCAGAAGGAATTAGACAAATGTTCTTCCCAGTAACCGTGCCAGCATATTACAGAACACCCCCAACCAATTTACAGGATTAA 1449 0.4286 MEPHVLVLAMVNWLLVVTVAIRLQVVVLLARDPTMVFLCGFGGNILGGMFCNFEAELRGYRKIRVDSDSQIGFISKVNTSKLARKRETGRLQLFHSSPSFNPHSLIFPLLSKFSSTNNLLQMGYEYILGGIIASSLVLVFVLYGSATKTKAKGSVHAESTIIRTSSENGNHHQEISETTDIIIVGAGVAGAALAYTLGKEGRRVHVIERDLSEPDRIVGELLQPGGYLKLIELGLQDCVGDEIDAQQVFGYALYKDGKNTKLSYPLEKFASDVSGRSFHNGRFIQGMRDKASSLPNVKLEEGTVTSLLEENGIIKGVHYKTKSGQEVAAKAPLTIVCDGCFSNLRRSLCNPKPVASTINTLAGALYKVFCASPDPASKEMRQACFDYLSLGGVFSDGPIALLSGLNPRPLSLVLHFFAVAIYGVGRLLIPFPSIKRMWIGARLISGASAIIFPIIKAEGIRQMFFPVTVPAYYRTPPTNLQD 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1955 482 PANTHER SQUALENE MONOOXYGENASE 352 482 IPR040125 GO:0004506|GO:0016126
Aed4g1955 482 PANTHER SQUALENE MONOOXYGENASE 122 352 IPR040125 GO:0004506|GO:0016126
Aed4g1955 482 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 330 345 - -
Aed4g1955 482 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 180 202 - -
Aed4g1955 482 PANTHER SQUALENE MONOOXYGENASE-RELATED 352 482 - -
Aed4g1955 482 Pfam Squalene epoxidase 352 435 IPR013698 GO:0004506|GO:0016021|GO:0050660
Aed4g1955 482 PANTHER SQUALENE MONOOXYGENASE-RELATED 122 352 - -
Aed4g1955 482 Gene3D - 176 394 IPR036188 -
Aed4g1955 482 Pfam NAD(P)-binding Rossmann-like domain 183 209 - -
Aed4g1955 482 SUPERFAMILY FAD/NAD(P)-binding domain 179 460 IPR036188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1955 Aed-Chr4 23254980 23258484 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1955 352 478 Miscellaneous Gene Families AT1G58440 75.591 2.17e-61 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g1955 K00511 - gmx:100796946 396.741
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g2014 10 24133253 24136950 Aed4g1955 4 23254980 23258484 PCT