Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed10g2014 ATGATGGAGTATCAGTATATTCTAGGATGGATCATGGTTTGTAGTTTTGCATTTTTTTATGTTGTGTACAGTTTTGGAGCAAAGAAGGTCACAGATTCAAGTTCAATACATGTAAAGAATAATAATGAGTGTGCAAATCAAAAGACATCATCATCAGAGAATGGAAGAATATGTTCACATGAGGATGCAGAAAGTGCTGACATCATCATTGTGGGTGCTGGTGTTGCTGGTGCAGCTCTTGCTTACACACTTGGAAAGGATGGAAGGCGAGTGCATGTGATTGAAAGGGATTTGAGTGAACCTGACAGGATTGTGGATTGTGTGGATGAAATTGATGCTCAGCAAATCTTTGGCTATGCTCTGTATAAGGAAAGCAAAAATACCAAGCTGCCTTATCCCTTGGAAAAGTTTAGCTCCGATGTTTCTGGGAGAAGCTTTCATAATGGCCGTTTCATACAGAGAATGAGAGAAAAGGCTTCATCTCTTCCAAATGTAAAATTGCAACAAGGAACTGTCACATCTCTACTTGAAGAAAAAGGAACCATCACTGGGGTGCAATACAAAACCAAAAATGGACAAGAGTTCACAGCAAAGGCTCCCCTCACCGTAGTATGTGATGGTTGTTTTTCCAACTTGAGACGTTCTCTTTGCAATCCTAAGGTTGAAGTGCCCTCTCATTTTGTTGGTCTGGTCTTGGAGAATTGTAATCTTCCATATGCAAATCATGGACATGTCATCTTAGGTGATCCTTCACCCATTTTGTTTTACCCCATCAGTAGCACTGAGATTCGCTGTTTGGTTGATGTGCCTGGCCAAAAATTACCTTCCCTTGGTAGTGGCGAAATGGCATGTTATTTGAAAACTGTGGTAGCTCCTCAGCCAGTGGCATCTACAATAAACACACTAGCCGGGGCATTGTACAAAGTGTTTTGTGCATCTCCTGATCCAGCTAGAAAGGAAATGCGCCAAGCATGTTTCGATTACTTGAGCCTTGGAGGTGTTTTCTCAGATGGACCAATAGCTCTACTCTCCGGTCTTAATCCTAGTCCATTGAGTTTGGTTCTCCATTTCTTTGCGGGTGCATCAGGCATAATTTTCCCCATTATTAAGGCTGAAGGAGTGAGACAAATGTTCTTCCCAGCAACAGTGCCAGCATATTATAGAACCCCTCCTGTCCATTGA 1182 0.4205 MMEYQYILGWIMVCSFAFFYVVYSFGAKKVTDSSSIHVKNNNECANQKTSSSENGRICSHEDAESADIIIVGAGVAGAALAYTLGKDGRRVHVIERDLSEPDRIVDCVDEIDAQQIFGYALYKESKNTKLPYPLEKFSSDVSGRSFHNGRFIQRMREKASSLPNVKLQQGTVTSLLEEKGTITGVQYKTKNGQEFTAKAPLTVVCDGCFSNLRRSLCNPKVEVPSHFVGLVLENCNLPYANHGHVILGDPSPILFYPISSTEIRCLVDVPGQKLPSLGSGEMACYLKTVVAPQPVASTINTLAGALYKVFCASPDPARKEMRQACFDYLSLGGVFSDGPIALLSGLNPSPLSLVLHFFAGASGIIFPIIKAEGVRQMFFPATVPAYYRTPPVH 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed10g2014 393 PANTHER SQUALENE MONOOXYGENASE 293 360 IPR040125 GO:0004506|GO:0016126
Aed10g2014 393 Gene3D - 62 252 IPR036188 -
Aed10g2014 393 Pfam Squalene epoxidase 294 369 IPR013698 GO:0004506|GO:0016021|GO:0050660
Aed10g2014 393 Pfam Squalene epoxidase 198 293 IPR013698 GO:0004506|GO:0016021|GO:0050660
Aed10g2014 393 PANTHER SQUALENE MONOOXYGENASE-RELATED 293 360 - -
Aed10g2014 393 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 198 213 - -
Aed10g2014 393 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 67 89 - -
Aed10g2014 393 PANTHER SQUALENE MONOOXYGENASE 2 293 IPR040125 GO:0004506|GO:0016126
Aed10g2014 393 PANTHER SQUALENE MONOOXYGENASE-RELATED 359 393 - -
Aed10g2014 393 Pfam NAD(P)-binding Rossmann-like domain 70 96 - -
Aed10g2014 393 PANTHER SQUALENE MONOOXYGENASE 359 393 IPR040125 GO:0004506|GO:0016126
Aed10g2014 393 PANTHER SQUALENE MONOOXYGENASE-RELATED 2 293 - -
Aed10g2014 393 SUPERFAMILY FAD/NAD(P)-binding domain 64 228 IPR036188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed10g2014 Aed-Chr10 24133253 24136950 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed10g2014 238 391 Miscellaneous Gene Families AT1G58440 47.619 1.34e-40 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed10g2014 K00511 - gmx:100808856 496.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed10g2014 10 24133253 24136950 Aed10g2014 10 24133253 24136950 ECH
Aed10g2014 10 24133253 24136950 Aed4g1955 4 23254980 23258484 PCT