Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1781 ATGGCTTCCAACAAACTCCTTGCCACCATTTTGGTGCTTTCTCTCCTCTCTTACTCAACATTCACTCACGCCAATTGCCCACCACCCACTCCAAAGCCCACACCGCCAACACCAAAGCCCACACCGCCCACTCCAAAGCCCACGCCACCAACTCCGAAGCCCACACCACCCACTCCAAAGCCCACGCCACCAACTCCAAAGCCCAGTTGTCCTCCTCCTCCTTCACCATCACCACCACCACCACCAGCAGCAACCAATGCCACATGCCCCAAGGACACCTTAAAGCTAGGTGTTTGTGCTGACATCCTAGGACTTGTTAACGTTGTTATTGGAAATCCTCCTACGAGCGAGTGTTGTGCATTAATTAAGGGTTTGGCGGATTTGGAAGCTGCACTTTGCCTATGCACTGCAATTAAGGCCAATGTGCTTGGAATCAACTTGAACGTACCCGTCACGCTCAGCGTCATCCTCAGTGCTTGTCAAAAAACTGTCCCTGCTGGTTTCCAATGCCCCTCCTAA 519 0.5241 MASNKLLATILVLSLLSYSTFTHANCPPPTPKPTPPTPKPTPPTPKPTPPTPKPTPPTPKPTPPTPKPSCPPPPSPSPPPPPAATNATCPKDTLKLGVCADILGLVNVVIGNPPTSECCALIKGLADLEAALCLCTAIKANVLGINLNVPVTLSVILSACQKTVPAGFQCPS 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1781 172 Pfam Hydrophobic seed protein 88 171 IPR027923 -
Aed4g1781 172 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 92 171 IPR036312 -
Aed4g1781 172 PRINTS Proline rich extensin signature 70 87 - -
Aed4g1781 172 PRINTS Proline rich extensin signature 24 45 - -
Aed4g1781 172 PRINTS Proline rich extensin signature 50 66 - -
Aed4g1781 172 SMART aai_6 89 170 IPR016140 -
Aed4g1781 172 MobiDBLite consensus disorder prediction 26 86 - -
Aed4g1781 172 PANTHER LIPID TRANSFER PROTEIN 55 171 - -
Aed4g1781 172 PANTHER LIPID TRANSFER PROTEIN 1 27 - -
Aed4g1781 172 MobiDBLite consensus disorder prediction 22 87 - -
Aed4g1781 172 Gene3D - 85 172 IPR036312 -
Aed4g1781 172 CDD HPS_like 86 170 IPR027923 -
Aed4g1781 172 PANTHER - 55 171 - -
Aed4g1781 172 PANTHER - 1 27 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1781 Aed-Chr4 22106078 22106596 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1781 80 171 Acyl Lipid Metabolism Gene Families AT4G22490 39.362 1.20e-17 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g1781 - - gsj:114414965 172.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g1781 4 22106078 22106596 Aed4g1781 4 22106078 22106596 ECH
Aed6g1157 6 16281201 16281587 Aed4g1781 4 22106078 22106596 PCT