Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0894 ATGGGGGGGGAGAGAGTTTTTCATCATGGGGTGGTGTTGATGATGCTGTTTTTGTTGTGGGTTTGTAGTGTCACAGCCTCTGTGACTTATGACCACAAAGCCATTGTGGTTGATGGCAAGAGGAGAATTTTGCTCTCTGGCTCCATTCACTACCCGAGAAGCACACCTCAATATGTTCCTGGCATTGCTTTCAGAACCGACAATGAGCCGTTCAAGGCGGCTATGCAAAAATTCACTGCCAAGATTGTTAGCTTGATGAAAGAAGAGAGGCTGTTTCAATCTCAGGGTGGTCCAATCATTTTGTACACTGATTTTGGTGGTGCAGTCCCTCGTAGACCAGCAGAAGACTTGGCATTCTCAGTTGCAAGATTCATACAGAATGGTGGACTTGAAAATGAACCAAAGTATGGACATTTGAGAGAGTTGCATAAAGCTATAAAACAATGTGAACCTGCTTTAGTGGCCACAGATCCCAAAGTGCAATCGCTTGGATATAACCTTGAGGCACATGTGTTCTCCACCCCTGGTGCCTGTGCTGCATTCATTGCAAATTATGACACTAAATCTTTTGCAAAAGCTAAATTTGGAAATGGCCAATATGATCTACCACCTTGGTCTATCAGTATTCTTCCTGACTGCAAAACTGTTGTTTACAACACAGCAAAGGTTGGTAACGGCTGGCTGAAAAAGATGACTCCTGTAAACAGTGCATTTGCTTGGCAGTCATACAATGAAGAACCTGCCTCATCCAGCCAAGCTGATTCCGTTGCAACATATGCACTTTGGGAGCAAGTCAATGTGACGCGCGATTCTTCAGATTATCTGTGGTATATGACAGATGTCTACATTAATGGTAATGAAGGATTCTTAAAGAATGGACAATCTCCTGTTCTCACCGCAATTAACAATGTGAAACTGTGGGTTGGCAATAACAAGATTTCATTACTTAGTGTTGCTGTTGGTCTCCCGAATGTTGGTGTGCACTTTGAAACATGGAATGTAGGAGTGTTAGGCCCAGTGACTCTGAAGGGTCTAAATGAGGGGACACGAGACTTGTCGCGTCAGAAATGGTCTTACAAGGTTGGACTGAAAGGTGAATCCTTGAGCCTTCACACTGAAAGTGGGAGTAGCTCTGTTGAATGGATACAGGGATCATTAGTGGCTAAAAAGCAACCTTTGACATGGTACAAGACAACTTTTAGTGCGCCGGCTGGCAATGATCCATTGGCTCTGGATTTGGGAAGCATGGGAAAGGGTGAAGTATGGGTAAACGGTCGCAGCATCGGTCGCCATTGGCCTGGATACATAGCACATGGTAGTTGCAATGCTTGTAATTATGCTGGTTTTTTTACTGATAACAAATGCAGGACGAATTGTGGACAACCTTCTCAGAGATGGTACCATGTTCCTCGCTCATGGCTTAGCTCAGGTGGTAACTCCTTGGTTGTGTTCGAGGAATGGGGAGGTGACCCTAATGGAATTGCTTTGGTGAAAAGAACATGA 1503 0.4444 MGGERVFHHGVVLMMLFLLWVCSVTASVTYDHKAIVVDGKRRILLSGSIHYPRSTPQYVPGIAFRTDNEPFKAAMQKFTAKIVSLMKEERLFQSQGGPIILYTDFGGAVPRRPAEDLAFSVARFIQNGGLENEPKYGHLRELHKAIKQCEPALVATDPKVQSLGYNLEAHVFSTPGACAAFIANYDTKSFAKAKFGNGQYDLPPWSISILPDCKTVVYNTAKVGNGWLKKMTPVNSAFAWQSYNEEPASSSQADSVATYALWEQVNVTRDSSDYLWYMTDVYINGNEGFLKNGQSPVLTAINNVKLWVGNNKISLLSVAVGLPNVGVHFETWNVGVLGPVTLKGLNEGTRDLSRQKWSYKVGLKGESLSLHTESGSSSVEWIQGSLVAKKQPLTWYKTTFSAPAGNDPLALDLGSMGKGEVWVNGRSIGRHWPGYIAHGSCNACNYAGFFTDNKCRTNCGQPSQRWYHVPRSWLSSGGNSLVVFEEWGGDPNGIALVKRT 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0894 500 PRINTS Glycosyl hydrolase family 35 signature 38 55 IPR001944 GO:0004553|GO:0005975
Aed4g0894 500 PRINTS Glycosyl hydrolase family 35 signature 391 405 IPR001944 GO:0004553|GO:0005975
Aed4g0894 500 PRINTS Glycosyl hydrolase family 35 signature 418 434 IPR001944 GO:0004553|GO:0005975
Aed4g0894 500 Gene3D - 362 446 - -
Aed4g0894 500 PANTHER BETA-GALACTOSIDASE 299 500 - -
Aed4g0894 500 PANTHER BETA-GALACTOSIDASE 102 129 - -
Aed4g0894 500 Pfam Beta-sandwich domain in beta galactosidase 153 223 IPR041392 -
Aed4g0894 500 SUPERFAMILY Galactose-binding domain-like 207 346 IPR008979 -
Aed4g0894 500 PANTHER BETA-GALACTOSIDASE 129 301 - -
Aed4g0894 500 PANTHER BETA-GALACTOSIDASE 57 101 - -
Aed4g0894 500 PANTHER BETA-GALACTOSIDASE 7 57 - -
Aed4g0894 500 SUPERFAMILY Galactose-binding domain-like 356 495 IPR008979 -
Aed4g0894 500 Pfam Glycosyl hydrolases family 35 59 102 IPR031330 -
Aed4g0894 500 PANTHER BETA-GALACTOSIDASE RELATED 129 301 IPR001944 GO:0004553|GO:0005975
Aed4g0894 500 PANTHER BETA-GALACTOSIDASE RELATED 57 101 IPR001944 GO:0004553|GO:0005975
Aed4g0894 500 PANTHER BETA-GALACTOSIDASE RELATED 7 57 IPR001944 GO:0004553|GO:0005975
Aed4g0894 500 Gene3D Glycosidases 22 59 - -
Aed4g0894 500 Gene3D Glycosidases 60 221 - -
Aed4g0894 500 PANTHER BETA-GALACTOSIDASE RELATED 299 500 IPR001944 GO:0004553|GO:0005975
Aed4g0894 500 PANTHER BETA-GALACTOSIDASE RELATED 102 129 IPR001944 GO:0004553|GO:0005975
Aed4g0894 500 SUPERFAMILY (Trans)glycosidases 27 146 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0894 Aed-Chr4 8099435 8106775 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0894 11 62 Glycoside Hydrolase AT3G52840 51.923 2.53e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0894 - - gmx:100781959 764.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g2094 6 23500644 23504946 Aed4g0894 4 8099435 8106775 PCT