Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0642 ATGCAATCTTCCATTTCGCTCTCTTCTTCCTACGCTGCCACCGTTTCCGGGCCACGCCACACTTTTCCCCTCTCCGGTAGCAGTCTCGTGCCTTCCAATCACCGCTTCTGCGGCCTCCAGCGCCAGGCATTCACTTCCACTCCCCTCAACCAACACTGCCGCCGGAGGCGGCCGCACTCCGCCGCGGTATCCGCCGCGCTTTCTAACAATGGCACTACTCCCAAATCCTTCGACTATGACTTGCTAATCATCGGCGCCGGCGTCGGCGGCCACGGCGCCGCGCTACACGCTGTCGAGAAGGGTTTGAAAACGGCCATTGTTGAGGGAGACGTTGTTGGAGGGACGTGTGTGAACAGAGGCTGTGTTCCTTCTAAAGCTCTTTTGGCTGTGAGTGGTCGAATGCACGAGCTGCGGGATGATCATCACTTGAAATCGCTGGGTTTGCAGGTTTCTGCTGCTGGGTATGACAGACAAGCAGTTGCTGACCATGCTAATAATCTTGCTTCAAAAATTCGTGGACACTTGACCAACTCCATGAAAGCACTTGGAGTGGACATTCTCACTGGTTTTGGAACTATTGTGACTGTGATTACCAGTGACCATGCACTCAAACTGGAGACTGTTCCAGATTGGATAGCAATTGTAGGAAGTGGTTATATTGGCCTTGAATTCAGTGATGTATATACGGCTCTTGGAAGTGAGGTTACTTTTGTTGAAGCTTTAGACCAGCTCATGCCAGGATTTGATCCTGAAATTAGTAAGTTGGCTCAGAGAGTTCTCATAAATCCCCGGAATATTGACTATTATACTGGAGTTTTTGCATCCAAGATCACTCCTGCAAGAGATGGAAAACCTGTCACAATTGAGCTCATTGATGCAAAGACCAAGGAACAGAAGGATACTTTAGAGGTGGATGCTGCACTAATAGCAACTGGAAGGGCTCCATTCACACAAGGTCTTGGATTGGAGAATATTGATGTTGTAACACAGCGCGGTTTTGTTCCTGTGGATGAGCGCATGAGAGTACTTGATGCAAATGGAAACTTGGTTCCTCATTTGTATTGTATTGGAGATGCAAATGGCAAGATGATGCTTGCTCATGCTGCCAGTGCACAAGGAATTTCAGTGGTTGAACAAGTCACTGGAAGAGATCATGTGCTCAATCATTTAAGCATACCAGCTGCTTGTTTCACGCATCCTGAAATCAGCATGGTTGGATTGACTGAGCCACAAGCAAGGGAGAAAGCTGAAAAGGAGGGTTTTGAAGTAAGTGTTGCCAAAACAAGTTTTAAAGCTAACACAAAGGCCTTAGCTGAAAACGAAGGGGAGGGTCTTGCCAAGTTGATATACAGACCTGACACTGGAGAGATACTGGGAGTTCATATATTTGGGTTGCATGCTGCTGATCTCATCCACGAGGCATCCAATGCAATAGCATTAGGAACACTTATTCAGGATATAAAACTTGCAGTTCATGCTCATCCAACTTTGTCTGAGGTGCTTGATGAACTATTTAAATCAGCAAAGGTTAAAGCACAAGCTTCTGAGCCAGTAAAGGAAACAGTTACAGTTTAA 1575 0.4692 MQSSISLSSSYAATVSGPRHTFPLSGSSLVPSNHRFCGLQRQAFTSTPLNQHCRRRRPHSAAVSAALSNNGTTPKSFDYDLLIIGAGVGGHGAALHAVEKGLKTAIVEGDVVGGTCVNRGCVPSKALLAVSGRMHELRDDHHLKSLGLQVSAAGYDRQAVADHANNLASKIRGHLTNSMKALGVDILTGFGTIVTVITSDHALKLETVPDWIAIVGSGYIGLEFSDVYTALGSEVTFVEALDQLMPGFDPEISKLAQRVLINPRNIDYYTGVFASKITPARDGKPVTIELIDAKTKEQKDTLEVDAALIATGRAPFTQGLGLENIDVVTQRGFVPVDERMRVLDANGNLVPHLYCIGDANGKMMLAHAASAQGISVVEQVTGRDHVLNHLSIPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKANTKALAENEGEGLAKLIYRPDTGEILGVHIFGLHAADLIHEASNAIALGTLIQDIKLAVHAHPTLSEVLDELFKSAKVKAQASEPVKETVTV 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0642 524 Pfam Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 392 503 IPR004099 GO:0045454
Aed4g0642 524 PANTHER DISULFIDE OXIDOREDUCTASE 13 194 - -
Aed4g0642 524 PANTHER DIHYDROLIPOAMIDE DEHYDROGENASE 13 194 - -
Aed4g0642 524 Pfam Pyridine nucleotide-disulphide oxidoreductase 79 373 IPR023753 GO:0016491
Aed4g0642 524 PRINTS Pyridine nucleotide disulphide reductase class-I signature 80 102 - -
Aed4g0642 524 PRINTS Pyridine nucleotide disulphide reductase class-I signature 388 409 - -
Aed4g0642 524 PRINTS Pyridine nucleotide disulphide reductase class-I signature 479 499 - -
Aed4g0642 524 PRINTS Pyridine nucleotide disulphide reductase class-I signature 353 360 - -
Aed4g0642 524 PRINTS Pyridine nucleotide disulphide reductase class-I signature 305 319 - -
Aed4g0642 524 PRINTS Pyridine nucleotide disulphide reductase class-I signature 457 472 - -
Aed4g0642 524 PRINTS Pyridine nucleotide disulphide reductase class-I signature 112 127 - -
Aed4g0642 524 Gene3D - 312 379 IPR036188 -
Aed4g0642 524 Gene3D - 74 198 IPR036188 -
Aed4g0642 524 PANTHER DIHYDROLIPOAMIDE DEHYDROGENASE 195 516 - -
Aed4g0642 524 PIRSF Hg-II_reductase_MerA 184 507 IPR001100 GO:0016491
Aed4g0642 524 PIRSF Hg-II_reductase_MerA 51 195 IPR001100 GO:0016491
Aed4g0642 524 ProSitePatterns Pyridine nucleotide-disulphide oxidoreductases class-I active site. 113 123 IPR012999 GO:0016668
Aed4g0642 524 Gene3D - 391 515 IPR016156 GO:0016491|GO:0050660
Aed4g0642 524 SUPERFAMILY FAD/NAD(P)-binding domain 65 382 IPR036188 -
Aed4g0642 524 PRINTS FAD-dependent pyridine nucleotide reductase signature 338 360 - -
Aed4g0642 524 PRINTS FAD-dependent pyridine nucleotide reductase signature 304 320 - -
Aed4g0642 524 PRINTS FAD-dependent pyridine nucleotide reductase signature 211 229 - -
Aed4g0642 524 PRINTS FAD-dependent pyridine nucleotide reductase signature 81 100 - -
Aed4g0642 524 Gene3D - 199 311 IPR036188 -
Aed4g0642 524 PANTHER DISULFIDE OXIDOREDUCTASE 195 516 - -
Aed4g0642 524 SUPERFAMILY FAD/NAD-linked reductases, dimerisation (C-terminal) domain 391 505 IPR016156 GO:0016491|GO:0050660
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0642 Aed-Chr4 5472741 5477505 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0642 1 515 Acyl Lipid Metabolism Gene Families AT3G16950 75.401 0.0 817
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0642 K00382 - gmx:100803176 931.784
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g2328 6 25186274 25192641 Aed4g0642 4 5472741 5477505 PCT