Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0288 ATGGCAAATCACTCAAGCAGCTTCGGCGGTCGCAGTGGAGTACGAGTGGTGGTCGCCGGCGATCGCGCCACCGGAAAATCGAGCCTGATAGCCGCCATAGCGACGGAGTCATTCGCCGAGGCCGTTCCGCCGGTTCTTCCGCCCACTCTCCTCCCCCCCGATTTGTACCCCGACACCGTTCCTCTCACCATCGTTGACACACCTTCCAGCTTGGACAAACTGAGAAAGCGTAATGAGGAGTTGAAAGGAGCTGATGTTGTGGTGTTAACCTATTCTTGCAATGACACGGCGTCGTTTTCGCGGTTGAGTTCTTACTGGTTCCCGGAGCTGCAGAAGTTGGAGGTGAAGGCACCTGTAGTTGTGGTTGGTTGCAAGCTGGATCTTAGGGATGAAAGCGAGCAAGTGAGCTTGGAGCGCGTCATGACACAGCTTCTACAACAGTTCAAGGAAATTGTCACCTGCATTGAATGCTCTGCTGCTACGCAATACCAGGTCCCTGAAGTTTTTTATTTTGCTCAAAAAGCGGTACTTCATCCGGTAGATCCTTTGTATGATCATGAAAGTCAAACTTTAAAGGATCGATGTGTTAGGGCATTGAGAAGAATATTTGTTCTTTGTGATCGTGACATGGATGAAGCCCTCAATGATGCAGAACTAAACGAGTTTCAGGTTAGATGCTTCAATGCACCATTGCAATCCTCTGAAATAGCAGGAGTCAAAACAGTTGTACAGCAGAAAGTACCTGAAGGAGTCAACACACATGGTCTTACTTTTCCTGGATTTGTTTATGTCCATAATATGTTCCTCAAAAAAGGGCGTCCAGAGACATTATGGGCTGTTCTAAGAAACTTTGGATATGATAGTAATTTGAAACTCAAGGATGATTTCCTTCCAGTTCCATCTAAGTATGCTTTGGATCAGAGTGTGGAGCTGACAGGTGAAGCTGTAGAGTTTCTAAATGGTATCTTTCGACTTCCATGGGATGCTGATCGTTATAAGGATGCTGCTGAGAGAACTGACATGGGTTACATATCTCTTAATGCATTCCTGGCGCAGGGAACCAGAAAAACTCTTGTGTTGCGGGAGATACCAGAGAATCAAGTATCAAATGTTTTGTCAAATAAGGATTATTTGGCAGCATGTGATGTAGCTGTTTTTGTGTATGACAGCTCAGATGAACATTCATGGAAGAAATCCAGAGATTTGCTTGAGAAGGTTGCTAGACAAGGAGATCTAACTGGTTATAGAGTTCCTTGTCTACTTATTGCTGCTAAGGATGATTTACCTCCATATCTGAGGGCAGTACAAGATTCAGTTAAGGTTACTCAGGAATTGGGAATAGAGGCACCTATTCATGTAAGTATGAAATTAGGTGATTCAAGCAACGTGTACCATAAGATTGTCAATGCTGCAGAGCACCCTCATTTAAGCATTCCAGAAACTGAGATTGGGAGGAAAAGAAAGCAATACCATCGGCTTCTTCAGCACTCTCTTGTTTTTGCCTCAGTTGGGACTGCTATGGCATTTGTTGGTTTGGCAGCATGTCGTGCATATGCAGTTAAAAAGAATTCCTCTGGTTAG 1581 0.4478 MANHSSSFGGRSGVRVVVAGDRATGKSSLIAAIATESFAEAVPPVLPPTLLPPDLYPDTVPLTIVDTPSSLDKLRKRNEELKGADVVVLTYSCNDTASFSRLSSYWFPELQKLEVKAPVVVVGCKLDLRDESEQVSLERVMTQLLQQFKEIVTCIECSAATQYQVPEVFYFAQKAVLHPVDPLYDHESQTLKDRCVRALRRIFVLCDRDMDEALNDAELNEFQVRCFNAPLQSSEIAGVKTVVQQKVPEGVNTHGLTFPGFVYVHNMFLKKGRPETLWAVLRNFGYDSNLKLKDDFLPVPSKYALDQSVELTGEAVEFLNGIFRLPWDADRYKDAAERTDMGYISLNAFLAQGTRKTLVLREIPENQVSNVLSNKDYLAACDVAVFVYDSSDEHSWKKSRDLLEKVARQGDLTGYRVPCLLIAAKDDLPPYLRAVQDSVKVTQELGIEAPIHVSMKLGDSSNVYHKIVNAAEHPHLSIPETEIGRKRKQYHRLLQHSLVFASVGTAMAFVGLAACRAYAVKKNSSG 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0288 526 PANTHER MITOCHONDRIAL RHO GTPASE 2 7 335 - -
Aed4g0288 526 ProSiteProfiles Miro domain profile. 11 178 IPR020860 GO:0003924|GO:0005525
Aed4g0288 526 SUPERFAMILY EF-hand 182 351 IPR011992 -
Aed4g0288 526 Gene3D - 328 493 IPR027417 -
Aed4g0288 526 PANTHER RHO FAMILY GTPASE 7 335 IPR003578 GO:0005525|GO:0007264
Aed4g0288 526 SMART ras_sub_4 15 179 - -
Aed4g0288 526 SMART rho_sub_3 16 179 IPR001806 GO:0003924|GO:0005525
Aed4g0288 526 PRINTS Transforming protein P21 ras signature 115 128 - -
Aed4g0288 526 PRINTS Transforming protein P21 ras signature 14 35 - -
Aed4g0288 526 PRINTS Transforming protein P21 ras signature 154 176 - -
Aed4g0288 526 ProSiteProfiles small GTPase Rab1 family profile. 1 206 - -
Aed4g0288 526 SMART rab_sub_5 14 179 - -
Aed4g0288 526 Gene3D - 11 181 IPR027417 -
Aed4g0288 526 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 14 210 IPR027417 -
Aed4g0288 526 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 347 477 IPR027417 -
Aed4g0288 526 Pfam EF hand associated 230 313 IPR013567 -
Aed4g0288 526 Pfam Ras family 15 176 IPR001806 GO:0003924|GO:0005525
Aed4g0288 526 Gene3D - 186 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0288 Aed-Chr4 2061614 2068435 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0288 353 524 EF-hand Containing Proteins AT3G63150 56.977 2.74e-62 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0288 K07870 - gmx:100803790 607.446
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g0288 4 2061614 2068435 Aed8g0811 8 6881308 6888317 PCT