Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0060 ATGTTGACACTCAATTCTTCTCCTTCCAGTTTGATGGATTCTATTCCCAAATTGCGGCACCCTTCTTCCGCATTTCCATTTCCCACGCCCTTATCCTCTTCCCTCTCCTTCCGCTCCCTACCACCACCTCACTTTCGTTCGTCGTCGTTTAGGTTACCTTCCATCAGAGCCTCCTCTTCCCAAAATGACCCCGCGCTTCGCAGCCCAAGAAACACCCCCTCCCAACCCCCTCTCATCCAAACCCTAACCTCATTTCTCTCCCCCGTCGTCGAAACCACCTGCATCGTCATCGCCGCGGCCGCCTTCTTCTTCATGCGCTTCCACCACACGCCCGCCGTCATCGCCGCCCCCCTCACTCCCCCAACCGCCGAGACCGCGACCGAGACCGCCTTCACCGAGGAGGAAGCCGAGAGGGTTCTCCAAGAGCGACTCAGCACAAACCCCCGCGACACCGACGCGCTCCACGCGCTCATGGAGGTCAAGATCAGAGCGCGTAAAATCGACGAAGCCTTCGCGGTTCTGGACCGCCTCATCGAGCTCGAACCGGAGGAGCTCGACTGGCCTCTGCTGAAGGCGAACATGCACATCTACAACGACGACCACGCCAGCGCGCGCCACCTGTTCGAGGAAATCCTTAAGAAAGACCCACTCCGAGTCGAAGCTTTCCACGGCCTCGTCATGGCGACTTCGCAGTCCAACGAGTCCTTGAAAGGGTTGCTGAAGAGGGTGGAAGAAGCAATTGAGGTGTGCAAGAAGCAAAAAAAGGATTCCGATGTCAGAGACTTCAGGCTCTTGATTGCGCAGATCAAAGTCATGGAAGGGGATTTCTCTGAGGCGCTCAAGGCTTATCAGGAATTGGTCAAAGACGAGCCTAGGGATTTCAGGCCTTACTTGTGTCAGGGTATTATATATACCCTCCTAAAGAAGAAAAATGAAGCTGATCAACAATTCGATAAGTTTCGCAGGCTTGTTCCAAAGGATCATCCCTACAGGGAGTATTTCGAGGACAACATGTTCGCTACCAAGTTCTTCTCGCAGAAATTGGAGAGGGAGGGAGCAGCTGCTAGACCCTAA 1074 0.5447 MLTLNSSPSSLMDSIPKLRHPSSAFPFPTPLSSSLSFRSLPPPHFRSSSFRLPSIRASSSQNDPALRSPRNTPSQPPLIQTLTSFLSPVVETTCIVIAAAAFFFMRFHHTPAVIAAPLTPPTAETATETAFTEEEAERVLQERLSTNPRDTDALHALMEVKIRARKIDEAFAVLDRLIELEPEELDWPLLKANMHIYNDDHASARHLFEEILKKDPLRVEAFHGLVMATSQSNESLKGLLKRVEEAIEVCKKQKKDSDVRDFRLLIAQIKVMEGDFSEALKAYQELVKDEPRDFRPYLCQGIIYTLLKKKNEADQQFDKFRRLVPKDHPYREYFEDNMFATKFFSQKLEREGAAARP 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0060 357 Coils Coil 233 256 - -
Aed4g0060 357 SUPERFAMILY TPR-like 134 326 IPR011990 GO:0005515
Aed4g0060 357 Pfam Tetratricopeptide repeat 264 292 IPR019734 GO:0005515
Aed4g0060 357 MobiDBLite consensus disorder prediction 48 77 - -
Aed4g0060 357 MobiDBLite consensus disorder prediction 51 77 - -
Aed4g0060 357 PANTHER TETRATRICOPEPTIDE-LIKE HELICAL DOMAIN-CONTAINING PROTEIN-RELATED 18 350 - -
Aed4g0060 357 Gene3D Tetratricopeptide repeat domain 121 342 IPR011990 GO:0005515
Aed4g0060 357 ProSiteProfiles TPR repeat profile. 260 293 IPR019734 GO:0005515
Aed4g0060 357 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 5 18 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0060 Aed-Chr4 398746 399819 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0060 - - gmx:102661172 533.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g0060 4 398746 399819 Aed8g0340 8 2811998 2812966 PCT