Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0054 ATGATGAAGAAACAATTGACAGGTATACGGGGCGATTCTCACCTGCAGTCGGCAATCCGTGCTGGAAATTTAGAATTGGTTCTTGAAATCATCTCTCAGATTTCAGAGGAAGAATTGAAGGAGTTGCTTTCAAAATTAAACAACTCTTGTGAAACTGCCTTATATGTTGCTGCTGAAAGTGGTCATCTTGATATATTGAAGGAATTGATTAGATACCATGAATTTGGGTTCGCCAGCTTGAAAGCTAGAAATGGATTTGATGCATTCCACATTGCTGCTAAAAATGGACACTTGGATATATTGAAGGTCCTCATGGAGGCCATTCCTGAAATTTCAATGACTGTTGATATGTCAAACACTACCGCATTGCATACTGCTGCAGCACAAGGACACATTGAGGTAGTAAATTTTCTCTTGCAAAAAGGTAGTAGCTTGGTAACTATTGCAAAAAGCAATGGGAAAACGGTGTTGCATTCTGCTGCAAGAAGTGGCTACGTGGAGGTCGTCAAGGCCCTTCTGAGCAAAGAACCTGAAATTGCAATGAGAATTGACAAGAAGGGGCAGACAGCACTTCACATGGCAGTTAAAGGACAGAATCTTGAGTTAGTAGATGAGCTTATGAAACTGAATCCATCTTTGGCTAATATGGTGGATGCCAAGGGAAACACTGCACTGCATATAGCAACCCGGAAGGGTCGTCTACAGGTTGTTCAGAAGCTACTAGATTGCAGAGAAATAGACACAGATGTTATTAACAAATCTGGAGAAACTGCTTTGGATACCGCAGAGAAAAATGGCCGCTTGGAAATTGCCAACTTTCTGCAGCATCGTGGTGCTCAAAGTGCCAAGTCCATCAAGTCACCTACGGCAAACACAGCCCTTGAACTCAAACGAACAGTGAGTGACATAAAAAGTGGGGTTCATAACCAGCTGGAACACACAATTAAAACACAAAGACGTATGCAAGGTATAGCGAAGCGAATCAACAAAATGCACACTGAGGGGCTTAACAATGCGATCAACTCCAACATTGTTGTTGCTGTCCTAATTGCAACAGTTGCTTTTGCTGCCATATTTAATGTCCCGGGCCAGTATCCTGAGAAACCAAGTGAACTCTCTCCTGGAATGTCTCCTGGGGAAGCATACATTGCTCCGGATATCGCATTCATGATATTCATGATCTTTGATTCTACTGCCCTCTTCATATCACTGGCTGTTGTGATTGTCCAAACATCAATAGTTGTTATTGAGAGGAAAGCAAAGAGACAAATGATGGCAGTTATAAATAAGTTGATGTGGGTTGCATGTGTGCTAATTTCTGTGGCATTTATTGCAATGTCATACATAATTGTTGGGGATCAAAAAGAGTTGGCTATAGCAGCCACAGCTCTAGGAACAGTGATAATGGCAGCTACTTTGGGAACACTGTGTTATTGGGTGATTGCTCACCGCCTTGAGGCCTCAAGATTGCGAAGTCTTAGGACAACAATGAGTAGTAGACAGTCAGTGTCTATGTCAATGATGTCAGGATCGGAGAATGAGTATAAGACAGTGTATGCAATATAA 1566 0.4202 MMKKQLTGIRGDSHLQSAIRAGNLELVLEIISQISEEELKELLSKLNNSCETALYVAAESGHLDILKELIRYHEFGFASLKARNGFDAFHIAAKNGHLDILKVLMEAIPEISMTVDMSNTTALHTAAAQGHIEVVNFLLQKGSSLVTIAKSNGKTVLHSAARSGYVEVVKALLSKEPEIAMRIDKKGQTALHMAVKGQNLELVDELMKLNPSLANMVDAKGNTALHIATRKGRLQVVQKLLDCREIDTDVINKSGETALDTAEKNGRLEIANFLQHRGAQSAKSIKSPTANTALELKRTVSDIKSGVHNQLEHTIKTQRRMQGIAKRINKMHTEGLNNAINSNIVVAVLIATVAFAAIFNVPGQYPEKPSELSPGMSPGEAYIAPDIAFMIFMIFDSTALFISLAVVIVQTSIVVIERKAKRQMMAVINKLMWVACVLISVAFIAMSYIIVGDQKELAIAATALGTVIMAATLGTLCYWVIAHRLEASRLRSLRTTMSSRQSVSMSMMSGSENEYKTVYAI 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0054 521 ProSiteProfiles Ankyrin repeat region circular profile. 186 208 - -
Aed4g0054 521 ProSiteProfiles Ankyrin repeat profile. 186 208 IPR002110 GO:0005515
Aed4g0054 521 Gene3D - 1 147 IPR036770 -
Aed4g0054 521 ProSiteProfiles Ankyrin repeat region circular profile. 152 179 - -
Aed4g0054 521 SUPERFAMILY Ankyrin repeat 15 279 IPR036770 -
Aed4g0054 521 Pfam Ankyrin repeats (3 copies) 152 208 IPR002110 GO:0005515
Aed4g0054 521 Pfam Ankyrin repeats (3 copies) 84 145 IPR002110 GO:0005515
Aed4g0054 521 ProSiteProfiles Ankyrin repeat profile. 152 184 IPR002110 GO:0005515
Aed4g0054 521 ProSiteProfiles Ankyrin repeat region circular profile. 220 242 - -
Aed4g0054 521 PANTHER ANKYRIN REPEAT PLANT PROTEIN 1 521 - -
Aed4g0054 521 Pfam Ankyrin repeats (many copies) 218 262 IPR002110 GO:0005515
Aed4g0054 521 ProSiteProfiles Ankyrin repeat region circular profile. 118 145 - -
Aed4g0054 521 ProSiteProfiles Ankyrin repeat region circular profile. 84 106 - -
Aed4g0054 521 ProSiteProfiles Ankyrin repeat profile. 118 150 IPR002110 GO:0005515
Aed4g0054 521 SMART ANK_2a 118 148 IPR002110 GO:0005515
Aed4g0054 521 SMART ANK_2a 84 113 IPR002110 GO:0005515
Aed4g0054 521 SMART ANK_2a 10 41 IPR002110 GO:0005515
Aed4g0054 521 SMART ANK_2a 152 181 IPR002110 GO:0005515
Aed4g0054 521 SMART ANK_2a 186 215 IPR002110 GO:0005515
Aed4g0054 521 SMART ANK_2a 254 283 IPR002110 GO:0005515
Aed4g0054 521 SMART ANK_2a 49 79 IPR002110 GO:0005515
Aed4g0054 521 SMART ANK_2a 220 250 IPR002110 GO:0005515
Aed4g0054 521 Pfam Domain of unknown function 334 449 IPR026961 -
Aed4g0054 521 Gene3D - 148 322 IPR036770 -
Aed4g0054 521 ProSiteProfiles Ankyrin repeat profile. 220 242 IPR002110 GO:0005515
Aed4g0054 521 ProSiteProfiles Ankyrin repeat profile. 84 116 IPR002110 GO:0005515
Aed4g0054 521 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 1 521 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0054 Aed-Chr4 353823 358018 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0054 2 521 Miscellaneous Gene Families AT1G07710 63.636 0.0 613
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0054 - - gmx:100802370 890.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1666 1 14643444 14647458 Aed4g0054 4 353823 358018 ECH
Aed4g0054 4 353823 358018 Aed4g0054 4 353823 358018 ECH