Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed1g1666 ATGGCCTCCCACTCAAACCAACCAGGAGCCGGAGCTGAAGGGCAAGGAGAGAAGGACCCCCCAGCGGCGAGCTCCCAGAACCCGCTATCAGAGATATCCCCGTCGCCGTCTCCGTCGTCAGCAACGGCGCCGGCGCTGGTGCTGTCGAACTCGGGGAAGAGAATCGACCAGGCGGGGAAGAAGAAGTATGTGAAGCAGGTGACGGGGCGGCACAACGACACAGAGCTCCACCTGGCGGCGCAGAGGGGCGACGTGGGCGCGGTGAGGCAGATCCTTCTGGATGTTGATTCTCAGATAATGGGGACTCTTAGTGGCGACGACGATGATCTCAACGCCGAGATCGCGGAGGTGCGTGCTTGTCTCGTCAACGAAGAGAACGAGCTTGGTGAGACCCCTCTGTTCACCGCTGCTGAAAAGGGTCACCTCGATGTCGTCAAGGAGCTGCTCAACTATTCCACCGCTCAGACCGTTTCCAAGAAGAACCGATCCGGTTTTGATCCATTGCATATTGCTGCTAGTCAAGGCCACTACGGTACGTGTGTTTGGTTTTCTATTCTGCATGATTCATGGTGGATTTTGGTTGCAGCCATTGTTCAGGTTTTGCTAGATTATGACCCAGGATTGAGCAAAACTATTGGTCCCTCCAATTCCACTCCGCTTATAACTGCGGCGACAAGAGGGCACGTGGAAGTGGTGAATGAGCTGCTGTCAAAAGATTGTAGCTTGTTGGAGATTGCTAGATCCAATGGCAAAAATGCATTGCATTTAGCAGCTCGTCCGGGTCATGTGGAGATTGTGAAAGCCTTGCTTAGTAAAGATCCTCAGTTGGCTCGGAGGACTGACAAGAAAGGGCAAACTGCATTGCATATGGCTGTAAAAGGGCAGAGTTGTGATGTGGTCAAATTGCTTCTTGAGGCAGATGCTGCTATTGTTATGCTTCCAGACAAATTTGGTAACACCGCGTTACATGTGGCAACCAGGAAAAAGCGAGTAGAGATAGTGACTGAGTTATTACATCTGCCAGACACCAATGTGAATGCATTAACCAGAGACCACAAAACAGCTCTTGACATTGCTGAAAATCTTCCCCTCTCTGAAGAGGCATCAGATATAAAGGACTGTCTTTCTCGATATGGAGCACTTAGAGCCAACGAGCTCAACCAACCAAGGGACGAACTGAGGAAAACTGTTACTCAAATCAAGAAAGATGTTCACACCCAACTTGAACAAACCAAGAGAACCAACAAAAATGTTCACAATATTTCCAAAGAGCTAAGGAAACTCCACAGGGAAGGAATTAACAATGCCACAAACTCAGTGACAGTGGTGGCTGTATTGTTTGCTACAGTTGCTTTTGCTGCTATATTCACTGTGCCTGGTGGGGATAACGATAATGGCTCTGCAGTGGTAGCAGCTTATGCTGCTTTTAAAATCTTCTTCATCTTTAATGCTATTGCACTTTTTACATCTTTGGCTGTTGTGGTTGTTCAAATTACTTTGGTTAGAGGTGAAACTAAAGCAGAGAAAAGGGTGGTAGAGGTGATCAACAAGCTCATGTGGTTGGCTTCTGTCTGTACTTCAGTGGCGTTTATTGCTTCTTCTTACATAGTTGTGGGTAGGAAGAATGAGTGGGCTGCAATTTTGGTTACAGTAGTTGGAGGGGTGATAATATCTGGAGTTATTGGCACTATGACTTACTATGTAGTGAGGTCTAAGAGAAGCAGATCAATCAGGAAGAAGGAGAAGCAAGCTGCCAGGAGGAGTGGATCTAACTCATGGCATCATTCTGAATTCTCAAATTCCGAGGTTGATCGGATTTATGCGCTTTGA 1830 0.4776 MASHSNQPGAGAEGQGEKDPPAASSQNPLSEISPSPSPSSATAPALVLSNSGKRIDQAGKKKYVKQVTGRHNDTELHLAAQRGDVGAVRQILLDVDSQIMGTLSGDDDDLNAEIAEVRACLVNEENELGETPLFTAAEKGHLDVVKELLNYSTAQTVSKKNRSGFDPLHIAASQGHYGTCVWFSILHDSWWILVAAIVQVLLDYDPGLSKTIGPSNSTPLITAATRGHVEVVNELLSKDCSLLEIARSNGKNALHLAARPGHVEIVKALLSKDPQLARRTDKKGQTALHMAVKGQSCDVVKLLLEADAAIVMLPDKFGNTALHVATRKKRVEIVTELLHLPDTNVNALTRDHKTALDIAENLPLSEEASDIKDCLSRYGALRANELNQPRDELRKTVTQIKKDVHTQLEQTKRTNKNVHNISKELRKLHREGINNATNSVTVVAVLFATVAFAAIFTVPGGDNDNGSAVVAAYAAFKIFFIFNAIALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASVCTSVAFIASSYIVVGRKNEWAAILVTVVGGVIISGVIGTMTYYVVRSKRSRSIRKKEKQAARRSGSNSWHHSEFSNSEVDRIYAL 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed1g1666 609 ProSiteProfiles Ankyrin repeat region circular profile. 283 310 - -
Aed1g1666 609 ProSiteProfiles Ankyrin repeat region circular profile. 249 272 - -
Aed1g1666 609 Gene3D - 49 185 IPR036770 -
Aed1g1666 609 ProSiteProfiles Ankyrin repeat profile. 317 350 IPR002110 GO:0005515
Aed1g1666 609 SMART ANK_2a 163 194 IPR002110 GO:0005515
Aed1g1666 609 SMART ANK_2a 128 157 IPR002110 GO:0005515
Aed1g1666 609 SMART ANK_2a 249 278 IPR002110 GO:0005515
Aed1g1666 609 SMART ANK_2a 317 347 IPR002110 GO:0005515
Aed1g1666 609 SMART ANK_2a 71 100 IPR002110 GO:0005515
Aed1g1666 609 SMART ANK_2a 215 244 IPR002110 GO:0005515
Aed1g1666 609 SMART ANK_2a 283 312 IPR002110 GO:0005515
Aed1g1666 609 MobiDBLite consensus disorder prediction 20 44 - -
Aed1g1666 609 PANTHER ANKYRIN REPEAT PLANT-LIKE PROTEIN 35 603 - -
Aed1g1666 609 ProSiteProfiles Ankyrin repeat profile. 249 281 IPR002110 GO:0005515
Aed1g1666 609 Pfam Ankyrin repeats (3 copies) 197 274 IPR002110 GO:0005515
Aed1g1666 609 Pfam Ankyrin repeats (3 copies) 281 346 IPR002110 GO:0005515
Aed1g1666 609 Pfam Ankyrin repeats (3 copies) 76 180 IPR002110 GO:0005515
Aed1g1666 609 ProSiteProfiles Ankyrin repeat region circular profile. 128 150 - -
Aed1g1666 609 ProSiteProfiles Ankyrin repeat profile. 128 160 IPR002110 GO:0005515
Aed1g1666 609 SUPERFAMILY Ankyrin repeat 76 363 IPR036770 -
Aed1g1666 609 Gene3D - 186 380 IPR036770 -
Aed1g1666 609 ProSiteProfiles Ankyrin repeat profile. 283 315 IPR002110 GO:0005515
Aed1g1666 609 Pfam Domain of unknown function 431 537 IPR026961 -
Aed1g1666 609 PANTHER CASKIN 35 603 - -
Aed1g1666 609 MobiDBLite consensus disorder prediction 1 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed1g1666 Aed-Chr1 14643444 14647458 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed1g1666 22 609 Miscellaneous Gene Families AT3G12360 78.438 0.0 927
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed1g1666 - - gmx:100802596 983.015
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed1g1666 1 14643444 14647458 Aed4g0054 4 353823 358018 ECH
Aed1g1666 1 14643444 14647458 Aed1g1666 1 14643444 14647458 ECH