Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2622 ATGTCTGTTCAAAACTCTCTCCGAGTAACTCGAAGTGGTACTGATGGTGGTTATGATGATGATGGGCGTACCAGGAGGACTGGAACTTTATGGAGTGCTGTGGCTCATATCATCACAGCTATTATTGGTGCTGGTGTTCTGTCTCTAGCATGGAGTACTTCCCAATTGGGATGGATTGCAGGACCACTTTGCTTACTTTTTTGTGCAATTGTCACCTATGTTTCTTCTCTCCTCCTTTCCGATTGTTACAGAACTCTGGATCCTGTAACTGGGAAAAGAAACTACACTTACATGGATGCTGTTAGAATCTATCTTGGCAATAAAAGGACATGGTTGGCTGGTTCCCTTCAATATTTGAGCTTGTATGGGGTTAGTACTGCTTATGTAATTACCACAGCAACCTGTTTGAGAGCGATACTGAAATCAAATTGTTATCACAAGGAAGGGCATGAGGCTCCTTGTAAATATGGGGATACAGTATATATGATGCTGTTTGGGCTAGTTCAGGTCATAATGTCATTCATACCAGATCTCCACAACATGGCATGGGTTTCAATTGTTGCGGCCATAATGTCCTTTACATACTCATCTATTGGACTTGGTCTTGGCATCAAAACAGTAATAGAGAATGGAAGAATCATGGGTAGTTTAACAGGAGTACCTGCTTCAAATATTGCTGACAAGTTATGGTTAGTCTTCCAAGCAATTGGTGATATTGCCTTTGCCTATCCATACACGATCATCCTCCTTGAGATACAGGACACTCTGGAGTCTCCTCCAGCAGAAAACAAGACCATGAAAAAGGCCTCCATGATTGCTATCCTCATAACAACATTTTTCTACCTGTGTTGTGGATGCTTTGGATATGCAGCTTTTGGAAATCAAACACCAGGGAACCTCTTAACAGGGTTTGGGTTTTACGAGCCTTATTGGCTCATTGACTTTGCCAATGCTTGCATTGTTCTTCACTTGGTAGGAGGATATCAGATTTACTGTCAGCCGATATATGGTGCTGTTGACAGATGGTGCTCAAAAAAATACCCCAACAGTGGATTTGTGAATAATTTCTACCAAATGAAACTGCCTCGGTTGCCAGGTTTTCAGCTAAACATGTTCAGGATATGTTTTAGAACAGCCTATGTGGTTTCCACGACTGGACTTGCTATCCTATTTCCTTACTTCAATCAAGTTATAGGAGTGTTAGGAGCCTTAGGCTTTTGGCCATTGGCTATATATTTCCCTGTAGAGATGTACTTTGTGCAGAGGAAAATTGAAGCTTGGTCTACAAAATGGATTGTCCTTAGGACCTTCAGCTTTTTTTGCTTTCTGGTGTCATTACTGGGTCTCGTTGGATCACTTGAAGGAATCATAAGTGAGAAACTAAGCTAA 1389 0.4147 MSVQNSLRVTRSGTDGGYDDDGRTRRTGTLWSAVAHIITAIIGAGVLSLAWSTSQLGWIAGPLCLLFCAIVTYVSSLLLSDCYRTLDPVTGKRNYTYMDAVRIYLGNKRTWLAGSLQYLSLYGVSTAYVITTATCLRAILKSNCYHKEGHEAPCKYGDTVYMMLFGLVQVIMSFIPDLHNMAWVSIVAAIMSFTYSSIGLGLGIKTVIENGRIMGSLTGVPASNIADKLWLVFQAIGDIAFAYPYTIILLEIQDTLESPPAENKTMKKASMIAILITTFFYLCCGCFGYAAFGNQTPGNLLTGFGFYEPYWLIDFANACIVLHLVGGYQIYCQPIYGAVDRWCSKKYPNSGFVNNFYQMKLPRLPGFQLNMFRICFRTAYVVSTTGLAILFPYFNQVIGVLGALGFWPLAIYFPVEMYFVQRKIEAWSTKWIVLRTFSFFCFLVSLLGLVGSLEGIISEKLS 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2622 462 Pfam Transmembrane amino acid transporter protein 26 457 IPR013057 -
Aed3g2622 462 PANTHER OS05G0424000 PROTEIN-RELATED 6 461 - -
Aed3g2622 462 Gene3D Amino acid/polyamine transporter I 23 334 - -
Aed3g2622 462 MobiDBLite consensus disorder prediction 1 21 - -
Aed3g2622 462 PANTHER TRANSMEMBRANE AMINO ACID TRANSPORTER FAMILY PROTEIN 6 461 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g2622 Aed-Chr3 28137371 28141590 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g2622 18 457 Organic Solute Cotransporters AT5G09220 53.499 0.0 531
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g2622 K24917 - gmx:100786621 864.374
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g2622 3 28137371 28141590 Aed3g2622 3 28137371 28141590 ECH
Aed4g2328 4 25728275 25731282 Aed3g2622 3 28137371 28141590 PCT
Aed3g2622 3 28137371 28141590 Aed4g2329 4 25733505 25738007 PCT