Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2599 ATGGGTGGAGATGAGGAAGGTGTGCGTGTTGGAGGAGAAGAGGAGGAGTCCCATACAAAAGAAGCAAGATTCAGAGGACTTTACAAGCTATTTGCATATACTATTTTTATAGCTATATGTTTCATTTGGCTCTACAGACTCGCAAACTTCCCCACAGTTACGTTGTACAAGTGTGGAAGATCATGGCCTTGGATTAGTGTTATGGTCTCAGAGTTAGCTTTCGGATTATACTGGATCATCACTCAGTCTCTTCGTTGGAAAATCGTCTATCAAACACCTTTCAAACACAGATATGGCGAGGAGAATTTACCCGCAGTGGATATTTTCGTGTGCACGGCTGACCCAACACTGGAGCCTCCATGCATGGCTATTAACACAGTATTATCAGCGATGGCGTACAATTATCCTTCCAATAAATTGAGTGTGTATCTCTCTGACGATGGAGGCTCAGAGCTAACTTTCTATGCTCTCTTAAAGGCCTCCATTTTTTCCAAACATTGGTTACCTTTCTGTAGAAGATTCAATGTTGAACCCAGGTCACCAGAAGCATTCTTTGCCGTTGCCGCCCAAAATTGCACCACTCACTATGGCCAAGCATGCTTATTTACCAAGAAATTATACCAAGAGATGAAAAGTGAGATTGAATCAGCCGTGGAAAGGGGCAAGGTTCCAGAGAGTGTGAGGAATCAGCACAAAGGATTCTCAGAATGGAATCCATTAACAACAAAGCAGGATCACCACCCCATCGTCCAAATGATAATCGATGGAAGGGACACAGATGCTGTAGACGAAGACGGAATTCAACTGCCAACAGTTATATACATGGCACGTGAAAAACGACCTAACTACCCTCATCACTTCAAAGCTGGAGCTGTTAATGCACTGATAAGAGTGTCATCCAAGATAAGCAACGCTCCATTCATCCTTAACATGGATTGTGACATGTACTCAAATAATGCAGATACAATTCAAGAAATCCTATGCTTCTTTCTGGATGAAACAAAAGGCCACGATATAGCTTATGTGCAATTTCCACATAGCTTTAATAACATCACCAAGAATGACCATTATGCAAATTCTTATAATGTGATCAATAAGTTTGAGCTAGCTGGCATGTGTGGATATGGAGCAGCCTTATATTGTGGAACTGGGTGTTTACATCGAAGAGAAAGTGTTTCAGGAGGTTACTTGAGAGATTACAAAGCAAAATGGGATTATAAGCCTAAAAGAAAAAGCGATAACAGAACAGTTGATGAATTGAATGAAGCATCAAAGGCTCTTGCCACTTGCACCTATGAGGAAGGCACTCAATGGGGGAAGGAGATGGGATTAGTATATGGTATTCCTGTAGAAGATGTTGCTACTGGCCTTGTAATCTCGTGCAGGGGTTGGAAATCGATTTATTACAACCCAGAAAGAAAAGCTTTCGTGGGTATTGCTCCAACAACCTTAGATGTAGCGTGTCTTCAACATATGAGGTGGTCAGAAGGCATGTTTCAGGTTTTCTTCTCCAAGTATTGCCCTTTCATTTATGGGCATGGGAAGATACCCTTGGGTTTACAAATGGGATATTGCAATTACCTCTTATGGGCTCCTATGTCTCTGCCTACTCTTTGTTATGTCATTGTTCCTCCTATTTGCATGCTTCATGGCATTCCATTGTTTCCACAGACAAAAGAAGCAAGATTGAGAGGAGTATACAAGGTATTTGCATGTACTATCTTTGCTGCTATATGTTTCATTTGCCTCTACAGACTCGCAAACTTCCCCACACTTGGACTTCGGACATGGCCTTGGATTTCTCTTATGCTCTCTGAGTTCGCTTTTGGATTATATTGGATCATCACTCAATCTGTTCGTTGGAGAATCGTCTATCAAACACCTTTCAAACACACCCTCTCACAAAGATATGATGAGGAGAATTTACCAGCAGTGGACATTTTCGTGTGCACGGCTGACCCCATATTGGAGCCTCCATGCATGGCTATTAACACCGTATTATCAGCAATGGCCTTCAATTATCCTTCCAATAAACTCAATGTCTATCTCTCTGACGATGGAGGCTCAGAGCTAACTTTCTATGCTCTCTTAAAGGCCTCCATTTTCTCCAAACATTGGTTACCTTTCTGTAGAAGATTCAATGTTGAACCCAGGTCACCAGAAGCATTCTTTGCCATAAGAGTGTCATCCGAGATAAGCAACTCCCCTTTCATTCTCAACTTGGATTGTGATATGTACTCCAATAATGCAAATACAATTCAAGAAATACTATGCTTCTTCTTAGATGAGACAAAAGGCCACGATATAGCTTATGTGCAATTTCCTCAGTGCTTTAATAACATCCCCAAGAATGACCATTATGCAAATTCTTATGTTGTGAGCAGTAAGTTTGAGCTAGCTGGCATATGTGGATATGGAGCAGCCTTGTATTGTGGAACTGGGTGTTTACATAGAAGAGAAAGTGTTTCAGGAGGTTACTTGAGAGATTACAAAGCAAAATGGGATTATAAGCCTAAAAGAAAAAGCGATAACAGAACAGTTGATGAATTGAATGAAGCATCAAAGGCTCTTGCCACTTGCACCTATGAGGAAGGCACTCAATGGGGGAAGGAGATGGGATTAGTATATGGTATTCCTGTGGAAGACATTCCTACTGGACTTGTAATCTCATGCAGGGGTTGGAAATCGATTTATTACAACCCGGAAAGGAGGGCTTTCTTGGGCATAGCTCCAACAACGTTGGATGTAAATATTCTGCAGCAAATGAGGTGGTCAGAAGGCATGTTTCAGGTTTTCTTCTCCAAGTATTGCCCTTTCATTTATGGGCATGGGAAGATACCCTTGGGTTTACAAATGGGATATTGCAACTACCTCTTATGGGCTCCTATGTCTCTGCCTACTCTCTGTTATGTCATTGTTTCTCCCATTTGCTTGCTTCATGGCATCCCATTGTTCCCACAGCTTACAAGCATATGGGTCCTTCCATTTGCATATGCATTTCTTGCTACCTATGGCTATAGCTTGTGTGAGTATTTGAGCTGTGGGTCCACGGCAAAGGGTTGGTGGAACTTGCAAAGGATTAAATTCATCCATAGGACCACTTCGTATCTCTTTGGTTTCATTGACACCATGACAAAGCAATTAGGATTGTCACGGACAAAATTTGTGATCACGGATAAAGTGGTTACTGAGGACGTACAAAAGAGGTATGAGCAAGAGGTCATTGAATTTGGAGGCTCTTCAATCATGTTAACCTTGTTAGCGACAGTGGCATTGCTAAACCTTTTTGGTCTCGTTGTGGGAATCAAGAGGATTATGATGGATTTGGAATTCGGCTCCAACCAATTGGTGATGCAGATTACTCTGAGTTCATTGGTGGTAATGATCAATTTACCAGTGTATGAGGCACTTTTCATTCGTAGTGATAAAGGTTGCATACCATCCTCAGTTATGCTCAAGTCCATTGTCTTGGCTGCATTAGCCTGTTGTCTACCACCTTTCATTGCTTATAGTCTGGCTTGA 3522 0.4174 MGGDEEGVRVGGEEEESHTKEARFRGLYKLFAYTIFIAICFIWLYRLANFPTVTLYKCGRSWPWISVMVSELAFGLYWIITQSLRWKIVYQTPFKHRYGEENLPAVDIFVCTADPTLEPPCMAINTVLSAMAYNYPSNKLSVYLSDDGGSELTFYALLKASIFSKHWLPFCRRFNVEPRSPEAFFAVAAQNCTTHYGQACLFTKKLYQEMKSEIESAVERGKVPESVRNQHKGFSEWNPLTTKQDHHPIVQMIIDGRDTDAVDEDGIQLPTVIYMAREKRPNYPHHFKAGAVNALIRVSSKISNAPFILNMDCDMYSNNADTIQEILCFFLDETKGHDIAYVQFPHSFNNITKNDHYANSYNVINKFELAGMCGYGAALYCGTGCLHRRESVSGGYLRDYKAKWDYKPKRKSDNRTVDELNEASKALATCTYEEGTQWGKEMGLVYGIPVEDVATGLVISCRGWKSIYYNPERKAFVGIAPTTLDVACLQHMRWSEGMFQVFFSKYCPFIYGHGKIPLGLQMGYCNYLLWAPMSLPTLCYVIVPPICMLHGIPLFPQTKEARLRGVYKVFACTIFAAICFICLYRLANFPTLGLRTWPWISLMLSEFAFGLYWIITQSVRWRIVYQTPFKHTLSQRYDEENLPAVDIFVCTADPILEPPCMAINTVLSAMAFNYPSNKLNVYLSDDGGSELTFYALLKASIFSKHWLPFCRRFNVEPRSPEAFFAIRVSSEISNSPFILNLDCDMYSNNANTIQEILCFFLDETKGHDIAYVQFPQCFNNIPKNDHYANSYVVSSKFELAGICGYGAALYCGTGCLHRRESVSGGYLRDYKAKWDYKPKRKSDNRTVDELNEASKALATCTYEEGTQWGKEMGLVYGIPVEDIPTGLVISCRGWKSIYYNPERRAFLGIAPTTLDVNILQQMRWSEGMFQVFFSKYCPFIYGHGKIPLGLQMGYCNYLLWAPMSLPTLCYVIVSPICLLHGIPLFPQLTSIWVLPFAYAFLATYGYSLCEYLSCGSTAKGWWNLQRIKFIHRTTSYLFGFIDTMTKQLGLSRTKFVITDKVVTEDVQKRYEQEVIEFGGSSIMLTLLATVALLNLFGLVVGIKRIMMDLEFGSNQLVMQITLSSLVVMINLPVYEALFIRSDKGCIPSSVMLKSIVLAALACCLPPFIAYSLA 1173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2599 1173 PANTHER CELLULOSE SYNTHASE-LIKE PROTEIN CSLE 19 559 - -
Aed3g2599 1173 Pfam Cellulose synthase 106 394 IPR005150 GO:0016020|GO:0016760|GO:0030244
Aed3g2599 1173 Pfam Cellulose synthase 849 1161 IPR005150 GO:0016020|GO:0016760|GO:0030244
Aed3g2599 1173 Pfam Cellulose synthase 419 584 IPR005150 GO:0016020|GO:0016760|GO:0030244
Aed3g2599 1173 Pfam Cellulose synthase 645 727 IPR005150 GO:0016020|GO:0016760|GO:0030244
Aed3g2599 1173 SUPERFAMILY Nucleotide-diphospho-sugar transferases 273 504 IPR029044 -
Aed3g2599 1173 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 558 725 - -
Aed3g2599 1173 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 726 1163 - -
Aed3g2599 1173 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 633 827 IPR029044 -
Aed3g2599 1173 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 93 198 IPR029044 -
Aed3g2599 1173 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 241 397 IPR029044 -
Aed3g2599 1173 PANTHER CELLULOSE SYNTHASE-LIKE PROTEIN CSLE 558 725 - -
Aed3g2599 1173 PANTHER CELLULOSE SYNTHASE-LIKE PROTEIN CSLE 726 1163 - -
Aed3g2599 1173 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 19 559 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g2599 Aed-Chr3 27979862 27990491 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g2599 543 729 Glycosyltransferase AT1G55850 46.032 4.44e-48 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g2599 - - gmx:100779861 962.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g2599 3 27979862 27990491 Aed3g2599 3 27979862 27990491 ECH
Aed4g2362 4 26009462 26024694 Aed3g2599 3 27979862 27990491 PCT