Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2598 ATGTCGGGCACGGATCGACCACTACCAAAGTTTGGTGAATGGGATGTGAATGATCCAGCTTCAGCTGAAGGCTACACTGTCATTTTCAACAAAGCTAGAGATGACAAAAAGACTGGTGGCAAACCTGACTCACCTGCAAAGCGTAATCGTAACAAAGCTCCGTTAGATACATCCAAAGCACAAAGTAGAAAATGGTTTTGTTGCATACACAGTCCTGCTGCGGAGTCATAG 231 0.4502 MSGTDRPLPKFGEWDVNDPASAEGYTVIFNKARDDKKTGGKPDSPAKRNRNKAPLDTSKAQSRKWFCCIHSPAAES 76
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2598 76 Pfam Cleavage site for pathogenic type III effector avirulence factor Avr 5 38 IPR008700 -
Aed3g2598 76 PANTHER PROTEIN NOI4 1 69 - -
Aed3g2598 76 PANTHER RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN 1 69 IPR040387 -
Aed3g2598 76 MobiDBLite consensus disorder prediction 29 61 - -
Aed3g2598 76 MobiDBLite consensus disorder prediction 29 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g2598 Aed-Chr3 27978978 27979713 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g2598 - - gmx:100817920 132.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g2598 3 27978978 27979713 Aed3g2598 3 27978978 27979713 ECH
Aed4g2363 4 26024519 26028361 Aed3g2598 3 27978978 27979713 PCT