Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2581 ATGATGAGAAGGCACTCCCTCGTGACTGCTTCACCAAAACAAGTGTCGACCCTCCTCTTTGTTGGCCACAACAACAACCCAACAATTCATCCTCACACACTTGTCACTCCACCACCAAATCCAAAACAAGACACACAAACACAAACCCATAATCATTGGTCGGGCTACCCCAACAGCAGGGTCAACACCTTGCACACTGCTTCCACTATAGAACAAGTTGAAGATGAGGACGCTGAACTCGATGTGTGGATCAAGATGCAGGAAGAAGCCAGACTCGATGTCACTGTTGAACCCATTTTGTCTGCCTACTACAACACTTCCGTTCTCTCTCACAAATCATTGCAAGCCGCGCTGGCCAATCACCTTGCCATCAAGCTCAGTAATTCAACCCTTCCCAGCGCCACTCTCTCTGATCTTTTTGTCACTGTTTTGGAAACTGACCAAGCCATCATGGACGCTGTCAAGAGTGACCTGAGAGCGGTGAAGGAGAGGGACCCTGCTTGCATAACCCACGTCCACTGCTTCTTAAATTTCAAAGGCTTTCTCGCATGCCAGGCACACAGGGTGGCTCACAAATTGTGGCTTCAGGGAAGAAAGATTCTAGCTGTCATGATTCAGAACCGGGTTTCTGAGGTTTTTGCTGTGGATATTCATCCTGGGGCCAAGATTGGAAGTGGGATTTTGCTGGATCATGCAACTGGGATTGTGGTGGGAGAGACTGCTGTGATTGGGAACAATGTGTCAATTCTGCATAGTGTGACTCTGGGAGGGACTGGTAAGGTTTGTGGGGATAGGCACCCCAAGATTGGTGATGGGGTGCTCATAGGCGCAGGTACTTGTATCTTGGGGAATATTAGGGTTGGTGATGGGGCTAAGATTGGTGCTGGTTCTGTTGTCATCAAGGATGTTCCTCCAAGGACTACTGTTGTTGGGAACCCTGCTAAGTTGGTTGGAGGGAAGAATAATCCTGTTAAGTTGGATAAGATTCCTAGCTTCACCATGGACCATACTTCACATCTTTCTGATTTTTATGATTATTGTGTTTAG 1047 0.4766 MMRRHSLVTASPKQVSTLLFVGHNNNPTIHPHTLVTPPPNPKQDTQTQTHNHWSGYPNSRVNTLHTASTIEQVEDEDAELDVWIKMQEEARLDVTVEPILSAYYNTSVLSHKSLQAALANHLAIKLSNSTLPSATLSDLFVTVLETDQAIMDAVKSDLRAVKERDPACITHVHCFLNFKGFLACQAHRVAHKLWLQGRKILAVMIQNRVSEVFAVDIHPGAKIGSGILLDHATGIVVGETAVIGNNVSILHSVTLGGTGKVCGDRHPKIGDGVLIGAGTCILGNIRVGDGAKIGAGSVVIKDVPPRTTVVGNPAKLVGGKNNPVKLDKIPSFTMDHTSHLSDFYDYCV 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2581 348 SUPERFAMILY Trimeric LpxA-like enzymes 82 317 IPR011004 -
Aed3g2581 348 SMART SATase_N_2_a 82 186 IPR010493 GO:0005737|GO:0006535|GO:0009001
Aed3g2581 348 ProSitePatterns Hexapeptide-repeat containing-transferases signature. 275 303 IPR018357 GO:0016740
Aed3g2581 348 PANTHER SERINE ACETYLTRANSFERASE 60 348 - -
Aed3g2581 348 CDD LbH_SAT 213 313 IPR045304 -
Aed3g2581 348 Pfam Serine acetyltransferase, N-terminal 82 186 IPR010493 GO:0005737|GO:0006535|GO:0009001
Aed3g2581 348 Gene3D Hexapeptide repeat proteins 216 335 - -
Aed3g2581 348 TIGRFAM cysE: serine O-acetyltransferase 154 315 IPR005881 GO:0005737|GO:0006535|GO:0009001
Aed3g2581 348 Gene3D serine acetyltransferase, domain 1 64 215 IPR042122 -
Aed3g2581 348 MobiDBLite consensus disorder prediction 39 58 - -
Aed3g2581 348 PANTHER SERINE O-ACETYLTRANSFERASE-RELATED 60 348 - -
Aed3g2581 348 MobiDBLite consensus disorder prediction 34 58 - -
Aed3g2581 348 Pfam Bacterial transferase hexapeptide (six repeats) 266 300 IPR001451 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g2581 Aed-Chr3 27915730 27916776 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g2581 82 344 Miscellaneous Gene Families AT2G17640 52.045 7.67e-90 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g2581 K00640 - gmx:100820316 592.423
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g2581 3 27915730 27916776 Aed3g2581 3 27915730 27916776 ECH
Aed4g2395 4 26251777 26252793 Aed3g2581 3 27915730 27916776 PCT