Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2517 ATGACAGGAGAGATAGTGAACCCAAAAGCTTACCCTTTGGCTGATGCGCAACTCACAATAACAATACTAGATCTCGTTCAACAAGCTGCCAACTACAAGCAACTCAAAAAGGGTGCCAATGAAGATTTTCATATTTTGTGGTTGAGGTTAATGTGTGATCAATCACACCTTAATGTTCCGTATGTATTCGTCCCATCAAAACAAGCACTTGGGCGAGCATGTGGAGTGACACGGCCAGTGATTGCATGTTCTGTAACAACCAATGAAGGAAGTCAACTGAAGTCCCAAATTCAGCAACTCAAGGCAACTACTGATGTTTTACACTGCTATTATAAACTGTTCAATGCTATAGCGTTTCAATCCGCACCTCATCTTCGCGTGTGGCTTAACTTAACCAACGAGATGGAGCAGACCTTCGTGTCGAAAGCGAGGACCGCCTTCCATTCCGCCGCGGCGAAAGCGGAGCGCGTTCTCTTGGATTTCAAATCCGATCGAGCATTGACTCAATTTGTTGACCGTGAAGAAGATCACGATAAGCAATCGTCGCCAGACACCTTCTCCGGCCAACAACCGGAAGCTGAATCTCCGCATAACAACGAAAACGACTCCAGGCTTCGTAGTGAATTTAAGCATATAAAGTGGAGGCCTCCACATTTAGGAATAAAACAGGATTGGCAAGATAGAATAAAAAACATCCGGAGAGGGAGAAAAGAAGTTGAAGATACAGATAAAGTCGGGGATGCAAGCATGGCAATTCCATTTTACGATGATAATCTGTACCTCCTGAATGTCAAGAATGATCTTGAGGCCAAGGCTTCAGAAGCAATTCCCTCAGTTGAAGGCCTCAATGCTGCAACTAAAGATCCCATTCCTTCATCATCTGTGCTGAAGCAATTGGCTACAGCTGTTGAGGCTGGAAGTAAAGTGAAGTCAATGAAAGATTTTATAGCTTCATCAGGGGGTTGTTCACCTGCTAAAGAGAGGGCAGGCTTAAGTCTTTCAGCAGTTAAGGCTTTAGTGCTACGAGAAAAGGAGGACACACTTACCTCTGAGTTTACTAGCAACAAGAAAGTTGTGAAGCTAATTAATTCTCTGTTTGATCCAGAAGGAGATTTCCTTAGAAGAAAGATCAACTCTAATCCAGAGGAAACTGCTATGACATCTTTGCCAAGAGATATTCATGGTGCACCTCCTGAAAGCCTTGTTGTTAAGCTAGCTGAAATCCTTGGAAACTACAAGACTCCTCGAAAAATGGCTCTTTTCTGGTGCATGGTTGTTGCTGAACTAAAAAATCATTGGTATGAGGAACAATACTTACCAGGAGTCCCCCAGAATGAGATTCCTGATCTGAGGTCATGTCTTCTATATCAACAATTTCAAGTAATTAATTGTTGCATCTCTCGGAAAAGGTTCCGTATTATTGCCACTGAATCTTTAGACTCTATGATGATCCAAGCTAATTCAGACATAAAAGAATCAACTGATTGTAGCGCTGGAGCTCCAGCAAGCCCCGTTCTATATGCTAGATTGAATAGTGGGGAGCTTGTTCTTCGACTTGGTGCAGATTGTCCTGCTGGAGATATGACATTGTTGGAAACTGGCGAGCCTGTGTATTCTCCAATCACTCAGGAAGGACCTTTGCTTACTGAAGATCTAATCAGGGAAACAGAGGAGTTTGTGCTGCGGACAGGGAGTGTTGGTGCTGGGTGCTCTCAACTGCTCTCAGATATGCAGGCTTTCAAGGCTGCAAATCCTGGATGTATTTTGGAGGATTTTGTAAGATGGCACTCTCCTCCTGATTGGACAGATAATGAAGCAAGTACAGAGGATAGTGATGTTTTTGATAGTGGTGAATCCTTGTCTGTCAAAGGTCAGCTAAGTCGGCGAATGCAAAAAGAAGGTAATTTGTGGCATGAATTGTGGGAAACATCTAAACCAGTACCTGCTGTTAAGCAGGCACCTCTGTTTGATGAGGATTTGGCAGTGGAGAGCATCCTCAATACATTTGAAGACATCCATCCTTCTGATATTTTTGAACAGCTGTTTGTTTCTCTACTTGGTTTAGGATTTGCAATTGCCGAACCTCTGCTGTCTAGTAACAGTGACTTCTCGAAGTTATTCAATGACTGCAAGGAGTACATAATTGCTTCTTGTCAAAGCCACAAATTGAATGAGAGAGTTGATGATCTTGTCCAGGTATATGAAACAGTGGAGAAAATGTTAATGAATCCTGAAGAAGCACTAAAGATGATTAAGCAGACAGAGGAATCAACAAGTGAATCAAGGAGCCCGTTTAAGAATAGACTTAGCCTTATTTTTGGTGGCAGAGATAAAGATAAACTATTGAGGAAGTCTGTCTCAAAAGATCAGACAAACGATGAAGAAAAGACAGGTCGGCAATCATTCTCAAGTTTCTTTGACAGTAAGTCATCTTTGTTTGGAAAGAAGCCTCCCAAGTCTGGATCCCCATCTTCTTCTTCTGAGAAATCTTCTCTCGATACTGGTTGGACTCTTGTTTAG 2520 0.425 MTGEIVNPKAYPLADAQLTITILDLVQQAANYKQLKKGANEDFHILWLRLMCDQSHLNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLKATTDVLHCYYKLFNAIAFQSAPHLRVWLNLTNEMEQTFVSKARTAFHSAAAKAERVLLDFKSDRALTQFVDREEDHDKQSSPDTFSGQQPEAESPHNNENDSRLRSEFKHIKWRPPHLGIKQDWQDRIKNIRRGRKEVEDTDKVGDASMAIPFYDDNLYLLNVKNDLEAKASEAIPSVEGLNAATKDPIPSSSVLKQLATAVEAGSKVKSMKDFIASSGGCSPAKERAGLSLSAVKALVLREKEDTLTSEFTSNKKVVKLINSLFDPEGDFLRRKINSNPEETAMTSLPRDIHGAPPESLVVKLAEILGNYKTPRKMALFWCMVVAELKNHWYEEQYLPGVPQNEIPDLRSCLLYQQFQVINCCISRKRFRIIATESLDSMMIQANSDIKESTDCSAGAPASPVLYARLNSGELVLRLGADCPAGDMTLLETGEPVYSPITQEGPLLTEDLIRETEEFVLRTGSVGAGCSQLLSDMQAFKAANPGCILEDFVRWHSPPDWTDNEASTEDSDVFDSGESLSVKGQLSRRMQKEGNLWHELWETSKPVPAVKQAPLFDEDLAVESILNTFEDIHPSDIFEQLFVSLLGLGFAIAEPLLSSNSDFSKLFNDCKEYIIASCQSHKLNERVDDLVQVYETVEKMLMNPEEALKMIKQTEESTSESRSPFKNRLSLIFGGRDKDKLLRKSVSKDQTNDEEKTGRQSFSSFFDSKSSLFGKKPPKSGSPSSSSEKSSLDTGWTLV 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2517 839 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 47 92 IPR004038 -
Aed3g2517 839 Coils Coil 222 242 - -
Aed3g2517 839 MobiDBLite consensus disorder prediction 172 204 - -
Aed3g2517 839 Pfam Rab3 GTPase-activating protein catalytic subunit 518 670 IPR026147 -
Aed3g2517 839 PANTHER RAB3 GTPASE-ACTIVATING PROTEIN CATALYTIC SUBUNIT 135 838 - -
Aed3g2517 839 PANTHER RAB3 GTPASE-ACTIVATING PROTEIN CATALYTIC SUBUNIT 135 838 IPR045700 GO:0005096|GO:0043547
Aed3g2517 839 SUPERFAMILY L30e-like 6 101 IPR029064 -
Aed3g2517 839 MobiDBLite consensus disorder prediction 784 839 - -
Aed3g2517 839 MobiDBLite consensus disorder prediction 797 839 - -
Aed3g2517 839 Gene3D - 1 44 IPR029064 -
Aed3g2517 839 Gene3D - 45 108 IPR029064 -
Aed3g2517 839 PRINTS High mobility group-like nuclear protein signature 21 36 IPR002415 GO:0003723|GO:0005730
Aed3g2517 839 PRINTS High mobility group-like nuclear protein signature 8 21 IPR002415 GO:0003723|GO:0005730
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g2517 Aed-Chr3 27543359 27552654 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g2517 K18270 - gmx:100818643 1176.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g2517 3 27543359 27552654 Aed3g2517 3 27543359 27552654 ECH
Aed4g2470 4 26828672 26835765 Aed3g2517 3 27543359 27552654 PCT