Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2209 ATGGGCGATCATTTGGCGAGGGCCGAGGATTTTGCGAACAAGGCAGAGAAGAAGCTCAGCGGTTGGGGCTTGCTTGGCTCCAAATTCGAGGACGCTTCTGATCTCTTCGACAAATCCGCCAATTCCTACAAGCTCGCTAAATCATGGGACAAAGCAGGATCCACCTACATCAAATTGGCGAATTGTCATTTGAAGTTGGAAAGCAAGCATGAAGCTGCACAAGCTTATGTCGACGCTGCGCATTGCTATAAAAAAACTAATATAACTGAGTCTGCATCTTGCTTAGACCATGCTGTAAATATTTTCTGCGATATTGGAAGACTCTCTATGGCTGCTAGATATTTGAAGGAAATTGCTGAGTTGTATGAGTCCGAACAGAATATCGAGCAGGCCGTTGTTTATTATGAAAAATCAGCTGATTTATATGAAAATGAAGAAGTGAATACTTCTGCAAACCAATGCAAGCAAAAAGTTGCTCAATTCTCTGCCCAGCTAGAACAATATCAGAGGTCAATTGAGATTTATGAAGATATTGCTCGCCAGTCTCTCAGCAAAAATTTGCTGAAGTATGGAGTTAAAGGACATCTTCTTAATGCTGGCATTTGCCAACTTTGTAAAGGGGATGTTATTGCTATTACCAATGCATTGGAGCGATATCAGGACTTGGATCCAACATTTTATGGAACACGTGAATATAAATTTCTGGCAGATATTGCTGCTGCAATTGATGAAGAAGATATTGAAAAGTTTACTGAAGTTATCAAGGAATTTGATAGCATAACTCCTCTGGATTCTTGGAAGACAACACTTCTTTTGAGGGTGAAGGACAAACTGAAAGCCAAAGAACTTGAGGAGGATGATCTTACTTGA 870 0.4046 MGDHLARAEDFANKAEKKLSGWGLLGSKFEDASDLFDKSANSYKLAKSWDKAGSTYIKLANCHLKLESKHEAAQAYVDAAHCYKKTNITESASCLDHAVNIFCDIGRLSMAARYLKEIAELYESEQNIEQAVVYYEKSADLYENEEVNTSANQCKQKVAQFSAQLEQYQRSIEIYEDIARQSLSKNLLKYGVKGHLLNAGICQLCKGDVIAITNALERYQDLDPTFYGTREYKFLADIAAAIDEEDIEKFTEVIKEFDSITPLDSWKTTLLLRVKDKLKAKELEEDDLT 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2209 289 CDD SNAP 7 278 IPR000744 GO:0006886
Aed3g2209 289 Coils Coil 151 178 - -
Aed3g2209 289 SMART tpr_5 53 86 IPR019734 GO:0005515
Aed3g2209 289 SMART tpr_5 112 145 IPR019734 GO:0005515
Aed3g2209 289 Gene3D Tetratricopeptide repeat domain 5 288 IPR011990 GO:0005515
Aed3g2209 289 PRINTS NSF attachment protein signature 91 108 IPR000744 GO:0006886
Aed3g2209 289 PRINTS NSF attachment protein signature 255 275 IPR000744 GO:0006886
Aed3g2209 289 PRINTS NSF attachment protein signature 224 244 IPR000744 GO:0006886
Aed3g2209 289 PRINTS NSF attachment protein signature 119 136 IPR000744 GO:0006886
Aed3g2209 289 PRINTS NSF attachment protein signature 152 175 IPR000744 GO:0006886
Aed3g2209 289 PRINTS NSF attachment protein signature 28 47 IPR000744 GO:0006886
Aed3g2209 289 PRINTS NSF attachment protein signature 183 202 IPR000744 GO:0006886
Aed3g2209 289 SUPERFAMILY TPR-like 7 280 IPR011990 GO:0005515
Aed3g2209 289 ProSiteProfiles TPR repeat profile. 112 145 IPR019734 GO:0005515
Aed3g2209 289 PANTHER ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 1 289 - -
Aed3g2209 289 PANTHER SOLUBLE NSF ATTACHMENT PROTEIN SNAP 1 289 IPR000744 GO:0006886
Aed3g2209 289 Pfam Soluble NSF attachment protein, SNAP 7 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g2209 Aed-Chr3 25608941 25611957 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g2209 K15296 - gmx:100794564 498.434
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g2209 3 25608941 25611957 Aed3g2209 3 25608941 25611957 ECH
Aed7g2005 7 22882751 22886752 Aed3g2209 3 25608941 25611957 PCT