Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2197 ATGGAAGCTCTCAAGACCCTCTTCTTAGCCCTTTTTGTTGTCTTAGCTTCAGCATTGTTGTATTCAGCCAATGCCAAAATCCAGGAGCATGAGTTTGTTATTCAAGCAACCCCAGTGAAGAGGCTGTGCAACACCCACAGCACCATCACAGTGAATGGACAATTCCCTGGCCCAACATTGGAAGTCAACAATGGAGACACTTTGGTCGTCAAAGTCACTAACAAAGCTCGTTACAATGTCACCATTCACTGGCATGGTATTCGGCAAATGAGAACAGGATGGGCTGATGGACCAGAATTTGTGACTCAGTGTCCTATTCGTCCTGGAGAAAGTTACACCTATCGTTTTACCATTCAAGGACAAGAAGGAACACTTTGGTGGCATGCTCATAGTTCATGGCTAAGAGCCACTGTTTATGGTGCTTTAATCATTCACCCAAGGGAGGGTGAGGCGTATCCTTTCCCTAAGCCAAAACGCGAGACACCAATTCTTCTTGGGGAGTGGTGGGACGCAAACCCGATCGATGTTGTGAGACAAGCTACACAAACAGGAGCAGCTCCGAATATTTCTGATGCATACACCATCAATGGTCAACCTGGCGATCTTTACAAGTGTTCTACCCAAGGCACCAGCATTGTTCCAATAGATTCTGGCGAGACAAACCTCCTAAGGGTGATAAATGCCGCACTGAACCAACCCTTGTTCTTCACAGTGGCTAACCACAAGCTCACAGTGGTTGGTGCCGATGCCTCGTACATGAAACCCTTCACCACCAACGTCATCATGTTGGGACCAGGTCAAACCACCGATGTACTCATCCAAGGTGACCAACCACCCTCACGCTACTACATGGCCGCACGTGCCTACCAATCCGCACAAAACGCCCCCTTTGACAACACCACCACCACAGCCATTCTCAAATACAAATCAGCACCGTGTCCCGCCAAGGGTTCATCGATCAAACCCGTTATGCCATCTCTCCCAGCCTACAACGACACCAACACAGTCACCACTTTCAGTAACAGCTTCAGAAGCCCCAAAAGAGTTGAAGTTCCCGCGGAAATAGATGACAACCTGTTCTTCACCATTGGCCTTGGACTCAACAATTGCCCCAAGAATTTCAACGCGAACCAATGCCAGGGACCGAATGGAACGCGCTTCACCGCAAGCATGAACAATGTCTCGTTTGTTCTCCCGAACAAAGTTTCCATCTTGCAGGCTCATCACCTTGGAGTTCAAGGAGTGTTCACCAACGATTTTCCAACACAGCCTCCTGTAAAATTTGACTACACTGGTAATGTGAGTCGTTCGCTGTGGCAACCTGTTCCGGGGACTAAAGTGACAAAGTTGAAGTTTGGATCGAGGGTGCAGATTGTATTGCAGGATACTAGCATTGTGACCCCCGAGAACCACCCCATTCACCTTCATGGCTATGATTTCTACATCGTGGCTGAAGGGTTTGGAAATTTTGACCCCAACAAAGACAATTCTAAGTTCAACCTTGTTGATCCACCTATGAGGAACACTGTGGCAGTGCCAGTTAATGGATGGGCAGTTATCAGATTTGTTGCTGACAACCCAGGAGCTTGGATTCTGCATTGTCATTTGGATGTTCACATCGGGTGGGGTTTGGCAACTGTGCTCTTGGTGGATAATGGAGTAGGACTGTTGCAATCTATAGAGCCCCCTCCTGAGGATCTGCCTCTATGTTAG 1713 0.481 MEALKTLFLALFVVLASALLYSANAKIQEHEFVIQATPVKRLCNTHSTITVNGQFPGPTLEVNNGDTLVVKVTNKARYNVTIHWHGIRQMRTGWADGPEFVTQCPIRPGESYTYRFTIQGQEGTLWWHAHSSWLRATVYGALIIHPREGEAYPFPKPKRETPILLGEWWDANPIDVVRQATQTGAAPNISDAYTINGQPGDLYKCSTQGTSIVPIDSGETNLLRVINAALNQPLFFTVANHKLTVVGADASYMKPFTTNVIMLGPGQTTDVLIQGDQPPSRYYMAARAYQSAQNAPFDNTTTTAILKYKSAPCPAKGSSIKPVMPSLPAYNDTNTVTTFSNSFRSPKRVEVPAEIDDNLFFTIGLGLNNCPKNFNANQCQGPNGTRFTASMNNVSFVLPNKVSILQAHHLGVQGVFTNDFPTQPPVKFDYTGNVSRSLWQPVPGTKVTKLKFGSRVQIVLQDTSIVTPENHPIHLHGYDFYIVAEGFGNFDPNKDNSKFNLVDPPMRNTVAVPVNGWAVIRFVADNPGAWILHCHLDVHIGWGLATVLLVDNGVGLLQSIEPPPEDLPLC 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2197 570 Gene3D - 156 348 IPR008972 -
Aed3g2197 570 Pfam Multicopper oxidase 160 310 IPR001117 -
Aed3g2197 570 Gene3D - 368 570 IPR008972 -
Aed3g2197 570 PANTHER LACCASE 5 570 - -
Aed3g2197 570 ProSitePatterns Multicopper oxidases signature 1. 528 548 IPR033138 -
Aed3g2197 570 ProSitePatterns Multicopper oxidases signature 2. 533 544 IPR002355 GO:0005507
Aed3g2197 570 SUPERFAMILY Cupredoxins 23 173 IPR008972 -
Aed3g2197 570 CDD CuRO_1_LCC_plant 30 146 IPR034288 GO:0005507
Aed3g2197 570 Pfam Multicopper oxidase 420 552 IPR011706 GO:0005507|GO:0016491
Aed3g2197 570 SUPERFAMILY Cupredoxins 351 570 IPR008972 -
Aed3g2197 570 CDD CuRO_3_LCC_plant 415 553 IPR034289 GO:0005507
Aed3g2197 570 Gene3D - 16 146 IPR008972 -
Aed3g2197 570 TIGRFAM laccase: laccase 25 570 IPR017761 GO:0046274|GO:0048046|GO:0052716
Aed3g2197 570 PANTHER MULTI-COPPER OXIDASE 5 570 IPR045087 -
Aed3g2197 570 Pfam Multicopper oxidase 34 148 IPR011707 GO:0005507
Aed3g2197 570 CDD CuRO_2_LCC_plant 162 308 IPR034285 -
Aed3g2197 570 SUPERFAMILY Cupredoxins 154 346 IPR008972 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g2197 Aed-Chr3 25556131 25559469 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g2197 K05909 - gmx:100796956 1122.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g2197 3 25556131 25559469 Aed3g2197 3 25556131 25559469 ECH
Aed7g2017 7 22968726 22971595 Aed3g2197 3 25556131 25559469 PCT