Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2171 ATGGAATCGGATAAGTATATATGTGTTCGAGAAACTGCTCCACAGAATAGCGTGGTTATCATTGATATGAACATGCCAAATCAACCTTTGAGGAGGCCTATCACTGCGGATTCCGCTCTTATGAATCCGAATTCTAGAATCCTCGCTTTGAAAGCCCAACTGCAAGGGACTACTCAAGATCACCTACAAATATTTAACATTGAGATGAAAGCAAAGATGAAATCATATCAGATGCCTGAGCAGAGGCCGCAATTGGTAAAGGGAAACATGCAACTTTTCTCTGTGGATCAACAACGTAGCCAGGCTCTTGAAGCTCATGCTGCATCATTTGCCCAATTTAAAGTTCCTGGGAATGAAAACCCTTCTGTTTTGATTTCTTTTGCCTCAAAGACACTTAATGCTGGCCAAGTTATATCTAAGTTGCATGTTATTGAACTGGGTGCACAACCAGTGTCCATGCAGATATCCCACAAATACAATTTGATTTATGTGATTACAAAACTTGGCCTACTATTTGTCTATGATTTGGAGACAGCTACTGCTGTATATAGGAACAGAATCAGTCCAGATCCTATATTTTTGACTTCAGAAGCTACATCTGTTGGAGGCTTTTATGCCATCAACAGGAGAGGCCAGGTTTTATTGGCTACTGTTAATGAACAAACCATCGTGAACTTTGTCAGTGGCCAATTAAACAATTTGGAGCTAGCAGTTAGTCTTGCCAAAAGAGGAAATCTTCCTGGTGCTGAGAAGCTGGTAGTGGAACGTTTTCATGAACTGTTCGCCCAAACAAAATATAAGGAAGCTGCAGAGCTTGCAGCTGAATCTCCACAAGGAATCCTTCGAACTCCGGACACAGTTGCCAAATTTCAGAGTGTTCCTGTGCAAGCTGGGCAAACTCCTCCATTGTTGCAGTATTTTGGAACACTTTTAACAAGGGGAAAGCTGAATGCCTTTGAATCATTAGAATTGTCACGGTTGGTTGTGAACCAGAACAAGAAAAATCTGTTGGAAAATTGGTTGGCAGAGGACAAGCTTGAATGCAGTGAGGAGCTAGGAGATCTCGTTAAGGTTGGGTACACGCCTGACTACCTCTTCCTTCTGCAAACAATTCTCCGGGCAGATCCTCAGGGCGCTGTTAATTTTGCATTAATGATGTCTCAAATGGAGGGAGGTAGCCCAGTTGATTACAACACAATAACTGATCTCTTTCTCCAGAGAAATCTGATCCGAGAGGCAACAGCATTTCTCCTGGATGTTTTAAAGCCAAATCTACCAGAACACGGGTTCCTTCAGACAAAGGTGTTGGAGATAAATCTGGTGACTTTCCCCAACGTTGCTGATGCAATATTGGCTAATGGCATGTTCAGCCATTATGACCGTCCTCGTATTGCCCAACTTTGTGAAAAAGCTGGCCTTTATGTGCGAGCTTTGCAACATTACACTGAATTACCAGACATCAAACGTGTGATTGTTAATACACATGCAATTGAACCTCAGGTTTTTGAGGATCCTGACATTCACTTTAAGTACATTGAGGCAGCAGCAAAGACTGGTCAACTCAAGGAGGTCGAACGTGTGACAAGAGAATCAAATTTCTATGATGCTGAGAGAACCAAAAACTTTCTGATGGAGGCTAAACTTGCAGATGCCCGGCCTTTGATTAACGTTTGCGATCGTTATGGATTTGTTCCAGATCTAACACACTATCTATACACAAACAACATGATTCGCTACATTGAAGGCTATGTTCAGAAGGTGAACCCAGGGAATGCACCTTTAGTTGTTGGGCAGCTGCTAGATGATGAATGCGCGGAAGAATTTATCAAAGGCTTGATCCTTTCTGTTCGCTCATTACTGCCAGTTGAGCCCCTTGTGGAGGAATGTGAGAAGAGGAACCGGCTTCGTTTGCTCACACAGTTCTTGGAACATCTTGTGGCCAAGGCTCAACTCAGGGATGGGCTAGTAAGTGATGCAATTGAGTCATTTATACGAGCTGATGATGCTACACAATTTTTAGATGTTATCCGTGCTGCTGAAGATGGCAATGTTTACCATGACTTGGTGAAGTACTTGCTAATGGTAAGAGGGAAAGCAAAAGAACCCAAGGTCGACAGTGAGCTCATTTATGCATATGCAAAGATTGATAGGTTGAGTGACATTGAGGAGTTCATTCTTATGCCAAATGTTGCTAATCTTCAAAGTGTTGGTGACCGGTTGTACGATGAAGCATTATATGAAGCTGCAAAAATCATATTTGCTTTTATATCTAACTGGGCCAAGTTGGCTATCACACTGGTCAAATTACAACAGTTTCAAGGTGCTGTTGATGCAGCAAGGAAAGCTAACAGCTCAAAGACATGGAAGGAAGTTTGCTTTGCTTGTGTTGATGCAGAGGAGTTTCGTTTGGCCCAGATTTGTGGACTCAACATTATTATTCAGGAACGTTTTTCGTCGCTTCAGATGCAGACCTTAAATGATCTGGGTCTTCAGTATGTGATGGTGAAACAATATGCCAAGTTGCCAATATCCCTAAAAGTGGATGACTTGGAAGAAGTTAGTGAATATTACCAAAATAGAGGTTGCTTCAACGAGCTAATATCTCTCATGGAGAGTGGTTTAGGGTTAGAACGGGCTCATATGGGCATATTTACCGAGTTAGGAGTTCTGTATGCTAGATACCGCCCTGAGAAGCTTATGGAGCATATCAAACTATTCTCAACCCGCCTCAATATTCCTAAGCTCATACGAGCTTGTGATGAACAACAGCATTGGAAAGAATTGACCTATTTGTATATACAATATGATGAGTTTGATAATGCTGCAACTACCATCATGAACCATTCACCTGAAGCATGGGATCACATGCAATTCAAAGATGTTGTTGTTAAAGTTGCTAATGTGGAGTTGTATTACAAGGCTGTTCACTTCTACTTGGAAGAGCATCCAGATCTTATCAATGATGTTCTGAACGTCCTTGCACTTCGTGTGGATCACGCACGTGTTGTTGACATCATGCGGAAGGCTGGTCACCTCCGTCTTGTGAAACCATATATGGTTGCAGTTCAAAGCAACAATGTATCTGCTGTTAATGAAGCGTTGAATGAGATATATGTTGAGGAGGAAGATTATGACAGATTGCGCGAGTCAATTGATTTGCATGATAACTTTGATCAAATAGGCCTTGCCCAAAAGATTGAAAAGCACGAGCTTCTTGAGATGAGAAGAGTTGCTGCTTATATTTACAAGAAGGCAAGTAGGTGGAAGCAGTCTATTGCTTTGTCAAAGAAGGATAACCTTTACAAAGATGCCATGGAGACAGCCTCACAATCTGGCGAGCGTGAACTTGCTGAGGAGTTGCTTGTTTATTTCATTGATCAGGGAAAGAAGGAATGCTTTGCCTCTTGTCTATTTGTTTGCTATGATTTGATACGGGCAGACATTGTTCTGGAACTAGCTTGGATGCACAATATGATTGACTTTGCCTTCCCATATCTATTGCAGTTTATTCGTGAGTACACTGGCAAAGTTGATGAACTAGTGAAGGACAAAATTGAAGCACAAAATGAAGTGAAGGTTAAAGAGCAAGAGGAAAAGGACGTAGTTGCACAACAGAACATGTATGCTCAATTGTTGCCTCTTGCTTTGCCTGCACCACCAATGCCTGGAATGGGAGGAGGCTTTGCTCCTCCCCCTCCAATGGGTGGACTGGGGATGCCCCCAATGCCTCCTTATGGCATGCCATCCATGGGCAGCAGTTATTGA 3765 0.4234 MESDKYICVRETAPQNSVVIIDMNMPNQPLRRPITADSALMNPNSRILALKAQLQGTTQDHLQIFNIEMKAKMKSYQMPEQRPQLVKGNMQLFSVDQQRSQALEAHAASFAQFKVPGNENPSVLISFASKTLNAGQVISKLHVIELGAQPVSMQISHKYNLIYVITKLGLLFVYDLETATAVYRNRISPDPIFLTSEATSVGGFYAINRRGQVLLATVNEQTIVNFVSGQLNNLELAVSLAKRGNLPGAEKLVVERFHELFAQTKYKEAAELAAESPQGILRTPDTVAKFQSVPVQAGQTPPLLQYFGTLLTRGKLNAFESLELSRLVVNQNKKNLLENWLAEDKLECSEELGDLVKVGYTPDYLFLLQTILRADPQGAVNFALMMSQMEGGSPVDYNTITDLFLQRNLIREATAFLLDVLKPNLPEHGFLQTKVLEINLVTFPNVADAILANGMFSHYDRPRIAQLCEKAGLYVRALQHYTELPDIKRVIVNTHAIEPQVFEDPDIHFKYIEAAAKTGQLKEVERVTRESNFYDAERTKNFLMEAKLADARPLINVCDRYGFVPDLTHYLYTNNMIRYIEGYVQKVNPGNAPLVVGQLLDDECAEEFIKGLILSVRSLLPVEPLVEECEKRNRLRLLTQFLEHLVAKAQLRDGLVSDAIESFIRADDATQFLDVIRAAEDGNVYHDLVKYLLMVRGKAKEPKVDSELIYAYAKIDRLSDIEEFILMPNVANLQSVGDRLYDEALYEAAKIIFAFISNWAKLAITLVKLQQFQGAVDAARKANSSKTWKEVCFACVDAEEFRLAQICGLNIIIQERFSSLQMQTLNDLGLQYVMVKQYAKLPISLKVDDLEEVSEYYQNRGCFNELISLMESGLGLERAHMGIFTELGVLYARYRPEKLMEHIKLFSTRLNIPKLIRACDEQQHWKELTYLYIQYDEFDNAATTIMNHSPEAWDHMQFKDVVVKVANVELYYKAVHFYLEEHPDLINDVLNVLALRVDHARVVDIMRKAGHLRLVKPYMVAVQSNNVSAVNEALNEIYVEEEDYDRLRESIDLHDNFDQIGLAQKIEKHELLEMRRVAAYIYKKASRWKQSIALSKKDNLYKDAMETASQSGERELAEELLVYFIDQGKKECFASCLFVCYDLIRADIVLELAWMHNMIDFAFPYLLQFIREYTGKVDELVKDKIEAQNEVKVKEQEEKDVVAQQNMYAQLLPLALPAPPMPGMGGGFAPPPPMGGLGMPPMPPYGMPSMGSSY 1254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2171 1254 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 388 544 IPR000547 GO:0006886|GO:0016192
Aed3g2171 1254 Coils Coil 1170 1197 - -
Aed3g2171 1254 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 990 1133 IPR000547 GO:0006886|GO:0016192
Aed3g2171 1254 PANTHER CLATHRIN HEAVY CHAIN 503 647 - -
Aed3g2171 1254 Gene3D Tetratricopeptide repeat domain 823 1089 IPR011990 GO:0005515
Aed3g2171 1254 SUPERFAMILY Clathrin heavy-chain terminal domain 1 219 IPR016025 GO:0005198|GO:0006886|GO:0016192|GO:0030130|GO:0030132
Aed3g2171 1254 Gene3D - 1095 1191 - -
Aed3g2171 1254 Coils Coil 1030 1050 - -
Aed3g2171 1254 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 663 804 IPR000547 GO:0006886|GO:0016192
Aed3g2171 1254 Pfam Region in Clathrin and VPS 993 1132 IPR000547 GO:0006886|GO:0016192
Aed3g2171 1254 Pfam Region in Clathrin and VPS 667 802 IPR000547 GO:0006886|GO:0016192
Aed3g2171 1254 Pfam Region in Clathrin and VPS 844 984 IPR000547 GO:0006886|GO:0016192
Aed3g2171 1254 Pfam Region in Clathrin and VPS 502 605 IPR000547 GO:0006886|GO:0016192
Aed3g2171 1254 Pfam Region in Clathrin and VPS 392 495 IPR000547 GO:0006886|GO:0016192
Aed3g2171 1254 SUPERFAMILY ARM repeat 717 1084 IPR016024 -
Aed3g2171 1254 PIRSF CHC 356 503 IPR016341 GO:0016192|GO:0032051|GO:0071439
Aed3g2171 1254 PIRSF CHC 644 822 IPR016341 GO:0016192|GO:0032051|GO:0071439
Aed3g2171 1254 PIRSF CHC 498 647 IPR016341 GO:0016192|GO:0032051|GO:0071439
Aed3g2171 1254 PIRSF CHC 1 83 IPR016341 GO:0016192|GO:0032051|GO:0071439
Aed3g2171 1254 PIRSF CHC 80 358 IPR016341 GO:0016192|GO:0032051|GO:0071439
Aed3g2171 1254 PIRSF CHC 828 1230 IPR016341 GO:0016192|GO:0032051|GO:0071439
Aed3g2171 1254 PANTHER CLATHRIN HEAVY CHAIN 836 1253 - -
Aed3g2171 1254 SUPERFAMILY ARM repeat 221 357 IPR016024 -
Aed3g2171 1254 PANTHER CLATHRIN HEAVY CHAIN RELATED 646 814 - -
Aed3g2171 1254 PANTHER CLATHRIN HEAVY CHAIN RELATED 1 80 - -
Aed3g2171 1254 SUPERFAMILY ARM repeat 333 559 IPR016024 -
Aed3g2171 1254 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 841 987 IPR000547 GO:0006886|GO:0016192
Aed3g2171 1254 SMART CLH_2 663 804 IPR000547 GO:0006886|GO:0016192
Aed3g2171 1254 SMART CLH_2 990 1149 IPR000547 GO:0006886|GO:0016192
Aed3g2171 1254 SMART CLH_2 388 542 IPR000547 GO:0006886|GO:0016192
Aed3g2171 1254 SMART CLH_2 841 987 IPR000547 GO:0006886|GO:0016192
Aed3g2171 1254 PANTHER CLATHRIN HEAVY CHAIN RELATED 81 357 - -
Aed3g2171 1254 PANTHER CLATHRIN HEAVY CHAIN RELATED 503 647 - -
Aed3g2171 1254 Gene3D - 1 82 IPR016025 GO:0005198|GO:0006886|GO:0016192|GO:0030130|GO:0030132
Aed3g2171 1254 PANTHER CLATHRIN HEAVY CHAIN 646 814 - -
Aed3g2171 1254 Pfam Clathrin-H-link 245 310 - -
Aed3g2171 1254 PANTHER CLATHRIN HEAVY CHAIN 357 501 - -
Aed3g2171 1254 SUPERFAMILY ARM repeat 650 716 IPR016024 -
Aed3g2171 1254 Pfam Clathrin, heavy-chain linker 220 243 IPR015348 GO:0005198|GO:0006886|GO:0016192|GO:0030130|GO:0030132
Aed3g2171 1254 PANTHER CLATHRIN HEAVY CHAIN RELATED 357 501 - -
Aed3g2171 1254 Gene3D - 222 379 IPR012331 -
Aed3g2171 1254 PANTHER CLATHRIN HEAVY CHAIN 81 357 - -
Aed3g2171 1254 PANTHER CLATHRIN HEAVY CHAIN 1 80 - -
Aed3g2171 1254 PANTHER CLATHRIN HEAVY CHAIN RELATED 836 1253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g2171 Aed-Chr3 25386787 25401232 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g2171 K04646 - gmx:100786617 1023.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g2171 3 25386787 25401232 Aed3g2171 3 25386787 25401232 ECH
Aed7g2040 7 23143948 23156129 Aed3g2171 3 25386787 25401232 PCT