Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2160 ATGGGCCCCGTGACCTACAGCTACACAAGGTTCAAGTACTTCAACAGAACATACGACGTCTCCGAGCAGTCCCCTCCGCCGGACGTCAAGGAGGCCTTCTCCACCTTCTCCAAGGGCGCCGCCTCCATGTCCTCCGACCAGCTCCTCCTCTTCCTTCACGTCCACCAGCGCGAAACCAACTGCACCGCAGAGGATTCCAACCGCATCCTCGACACCATCCTCCAATCCCACAAACAACTAAACGACAACAACGCCGCCGACGACTCCCCCGGCCCCGACAACGACATTAACAACGGTCTCACCCTCGACGAGTTCTTCCGTTTCCTGTTCCTCCTCGATTTCAACGATCCCCTCAAATCCCAGGTACATCATGATATGAATGCTCCGTTGTCACATTATTTCATATATACAGGGCACAATTCCTACCTGACTGGGAATCAATTTAGCAGCTATTGCAGTGATGTGCCAATCATAAAGGCTTTGCAACAAGGTGTGCGAGTAATTGAACTAGATTTATGGCCAAATTCGACTAAAGATGATATTGACGTAGTTCATGGAAGGACACTTACTGCTCCTGTCTCACTTATCCAATGTTTGAAGTCCATAAAAGAGTATGCTTTTGTTAAATCTGACTACCCAGTCATCATAACTTTAGAGGACCACCTTCCACCAATTCTTCAAGCTAAAGTTGCAGAGATGATAGCTCAAGTATTTGGAGATATGCTCTATTTTCCTGAGGCAGATCTTTTGACAGAATTCCCCACACCAGAGTCGGTGAAAGGTCGAATTCTTATATCAACCAAACCACCAAAAGAATATCTTGAAACCAAGCAATCCAAGGATAGTGACAGTGAGAGGGAATCAACTGATGAAAGGCCATTATTGCCATGCATTATCCCTGAGTTGGAGTTTGTTTCTGATAAGTTAAATGAAAGTGGTCCTGATGAGGAAGCCTTGAATGCTCGTGATAAAAAGTCCGACCAACCGAGTGCACTGGAGTACAAACGTTTGATTACAATCCATGCTGGGAAGCCAAAGGGTGATGTAAGGGACCACTTGAACATTGTTGGGGGTGTAAAGCGCTTGAGCTTAAGTGAACAGGAACTTGGAAGGGCTTCTGTCACTTATGGATCTGATATTGTTAGATTTACACAGAAGAATATTATCAGGGTGTATCCAAAGGGAACACGTGTTAACTCCTCAAATTACATGCCACATATAGGATGGATATACGGAGCTCAGATGGTGGCATTTAACATGCAGGGGCATGGAAAACCACTCTGGTGTATGCACGGGATGTTTAGAGCAAATGGCGGGTGCGGTTATGTGAAAAAACCTGAATTTCTGATAGAAAATAGCCCAGATAATGAGGTTTTTGATCCTAAAAGAACAATGCCAGTGAAGATGACATTGGCGGTAAAAGTATATATGGGAAATGGGTGGAGCTCAGATTTCAGCAAAACACACTTTGATTCATTCTCTCCACCGGACTTTTACACAAAGGTCTGCATTGTTGGAGTACCAGCTGATAACGCCAATAAGAAGACCAGAGTAATTCAAGATGACTGGTTTCCTGTGTGGGACGAAGAGTTTGAATTTCCCTTAACTGTTCCGGACCTAGCTTTGCTCCGGATAGAAGTTCGGGAGTATGATAAGCATGAAAAGGATGACTTTGGTGGCCAAACATGTTTGCCAGTCTCTGAGCTAAGATCTGGTTTCCGTGCAATCGCTCTATTTGATGCGAAGGGCGAGCAATTCAAATCTGTAAAGCTTTTAATGCGGTTTCAGTTTCATATGAACTAA 1803 0.4481 MGPVTYSYTRFKYFNRTYDVSEQSPPPDVKEAFSTFSKGAASMSSDQLLLFLHVHQRETNCTAEDSNRILDTILQSHKQLNDNNAADDSPGPDNDINNGLTLDEFFRFLFLLDFNDPLKSQVHHDMNAPLSHYFIYTGHNSYLTGNQFSSYCSDVPIIKALQQGVRVIELDLWPNSTKDDIDVVHGRTLTAPVSLIQCLKSIKEYAFVKSDYPVIITLEDHLPPILQAKVAEMIAQVFGDMLYFPEADLLTEFPTPESVKGRILISTKPPKEYLETKQSKDSDSERESTDERPLLPCIIPELEFVSDKLNESGPDEEALNARDKKSDQPSALEYKRLITIHAGKPKGDVRDHLNIVGGVKRLSLSEQELGRASVTYGSDIVRFTQKNIIRVYPKGTRVNSSNYMPHIGWIYGAQMVAFNMQGHGKPLWCMHGMFRANGGCGYVKKPEFLIENSPDNEVFDPKRTMPVKMTLAVKVYMGNGWSSDFSKTHFDSFSPPDFYTKVCIVGVPADNANKKTRVIQDDWFPVWDEEFEFPLTVPDLALLRIEVREYDKHEKDDFGGQTCLPVSELRSGFRAIALFDAKGEQFKSVKLLMRFQFHMN 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2160 600 PRINTS Phospholipase C signature 388 409 IPR001192 GO:0035556
Aed3g2160 600 PRINTS Phospholipase C signature 155 175 IPR001192 GO:0035556
Aed3g2160 600 PRINTS Phospholipase C signature 409 427 IPR001192 GO:0035556
Aed3g2160 600 PRINTS Phospholipase C signature 252 269 IPR001192 GO:0035556
Aed3g2160 600 PRINTS Phospholipase C signature 564 574 IPR001192 GO:0035556
Aed3g2160 600 PRINTS Phospholipase C signature 129 147 IPR001192 GO:0035556
Aed3g2160 600 PANTHER PHOSPHOINOSITIDE PHOSPHOLIPASE C 6 7 597 - -
Aed3g2160 600 SUPERFAMILY PLC-like phosphodiesterases 124 451 IPR017946 GO:0006629|GO:0008081
Aed3g2160 600 SUPERFAMILY EF-hand 19 126 IPR011992 -
Aed3g2160 600 ProSiteProfiles C2 domain profile. 452 580 IPR000008 -
Aed3g2160 600 MobiDBLite consensus disorder prediction 271 292 - -
Aed3g2160 600 SMART C2_3c 470 578 IPR000008 -
Aed3g2160 600 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 470 597 IPR035892 -
Aed3g2160 600 PANTHER PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN 7 597 IPR001192 GO:0035556
Aed3g2160 600 SMART plcy_3 334 450 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Aed3g2160 600 Pfam C2 domain 471 572 IPR000008 -
Aed3g2160 600 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 124 268 - -
Aed3g2160 600 Gene3D - 24 117 - -
Aed3g2160 600 CDD C2_PLC_like 468 597 - -
Aed3g2160 600 Pfam Phosphatidylinositol-specific phospholipase C, Y domain 362 448 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Aed3g2160 600 Pfam Phosphatidylinositol-specific phospholipase C, X domain 126 268 IPR000909 -
Aed3g2160 600 MobiDBLite consensus disorder prediction 273 292 - -
Aed3g2160 600 Gene3D Phosphatidylinositol (PI) phosphodiesterase 121 462 IPR017946 GO:0006629|GO:0008081
Aed3g2160 600 ProSiteProfiles Phosphatidylinositol-specific phospholipase Y-box domain profile. 363 449 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Aed3g2160 600 Gene3D C2 domain 465 600 IPR035892 -
Aed3g2160 600 SMART plcx_3 124 268 IPR000909 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g2160 Aed-Chr3 25275514 25280292 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g2160 5 597 Acyl Lipid Metabolism Gene Families AT2G40116 57.329 0.0 712
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g2160 K05857 - gmx:100777010 1001.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g2160 3 25275514 25280292 Aed3g2160 3 25275514 25280292 ECH
Aed7g2050 7 23247058 23251181 Aed3g2160 3 25275514 25280292 PCT