Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2097 ATGACCATGAACAATGGCGAGGGAAGTGAAGGAGGGGCATTGCAGAGCCAGAGGGTGCTTTACATGTGGGGTTACCTTCCCGGAGCTCTGCCGCAGAGGACGCCGCTCTTGACGCCGGTTGCCGTTAGGGTTCCGTCGTGTGATTACTCTTGGAATGATGTTTCCGGCGGTGGCTGTGGTTTCGCTATTGCTATCTCTGAATCAGGGAAGCTCATCACATGGGGCTCAACAGATGATCTAGGCCAAAGCTATGTGACTTCTGGCAAGCATGGGGAAACCCCAGAGCCTTTCCCTCTTCCAACCGAAGCCTCTATTGTGAAAGCTGCAGCAGGATGGGCTCATTGTGTTGCTGTAACAGAACATGGAGAAGTTTATACATGGGGGTGGAAAGAATGTATTCCCTCTGGGAGGGTATTTGGTGAACCATCAACAGGGGTAAGTCTTGAAAAAGATGTGCCAGGAAGGCATAGTTCATTATCCACAGAGCAAGTGAGTCCTCGTTCTCAAGGCTCAAGATCTACTGGAGGTACTGCCTCCAGCCTTAGTGGAGAAGAAAGTACAAAACGAAGGAGAGTGTCCTCAGCAAAGAAAACAGCTGAAAGCTCGTCTCCCAGTGATGATAGTTTGACAGCATTTCCGTGTCTTGTCACGCTAAATCCAGGGATAAGGATAGCTAGTGTTGCTGCTGGTGGACGTCATACACTAGCACTGTCAGATACAGGACTGGTGTGGGGTTGGGGCTATGGAGGTGAAGGGCAGCTTGGTTTGGGTTCCAGAATACGTATGGTTTCCACTCCTCATCTTGTTCCTTGTATTGATTCCTCTTATTATGGTAAAGATAGATCTGCTACACTGGCTCGAGGAAACATGGGTTCAGAGGGACATACTTTTAGAGTTCCTGGAAGTTACATAAAGAGAATTGCTTGTGGAGGTCGACATAGTGCAGTGATTACAGATGCTGGAGCCTTGCTTACTTTTGGTTGGGGACTCTATGGACAGTGTGGGCAAGGAACTACCGATGATGAACTAAGCCCAACTTGTGTATCTTCCTTACTGGGTATCCACATAGAGGGAGTTGCTTCTGGACTGTGGCATACAGTCTGTACATCTGCTGATGGTGATGTGTATGCATTTGGTGGGAATCAGTTTGGGCAGCTGGGAACTGGTGCTGATCAAGCTGAGGTGTGCTCAGACTCTACCAAGACTAGTGGATTCTCCGAGTTTGGAAAATTTGCATGCAAAGAATATATCTTGTGGTGCTCGCCACACTGCTTTAGTAACAGTTTTCTTTCTTTTGTTTCTGTTCTTCAAGAGGGCGGAAAAGTTTTCTGCTGGGGATGGAACAAATATGGACAGCTGGGTCTTGGGGATGTGATTGACCGTAACATTCCTTCTGAAGTCACCATTGAAGGGTGTGTTCCTAAAAATGTTGCTTGTGGTTGGTGGCATACTCTTCTTCTGGCCGAGTCCCCCACTTGA 1479 0.4807 MTMNNGEGSEGGALQSQRVLYMWGYLPGALPQRTPLLTPVAVRVPSCDYSWNDVSGGGCGFAIAISESGKLITWGSTDDLGQSYVTSGKHGETPEPFPLPTEASIVKAAAGWAHCVAVTEHGEVYTWGWKECIPSGRVFGEPSTGVSLEKDVPGRHSSLSTEQVSPRSQGSRSTGGTASSLSGEESTKRRRVSSAKKTAESSSPSDDSLTAFPCLVTLNPGIRIASVAAGGRHTLALSDTGLVWGWGYGGEGQLGLGSRIRMVSTPHLVPCIDSSYYGKDRSATLARGNMGSEGHTFRVPGSYIKRIACGGRHSAVITDAGALLTFGWGLYGQCGQGTTDDELSPTCVSSLLGIHIEGVASGLWHTVCTSADGDVYAFGGNQFGQLGTGADQAEVCSDSTKTSGFSEFGKFACKEYILWCSPHCFSNSFLSFVSVLQEGGKVFCWGWNKYGQLGLGDVIDRNIPSEVTIEGCVPKNVACGWWHTLLLAESPT 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2097 492 SUPERFAMILY RCC1/BLIP-II 20 490 IPR009091 -
Aed3g2097 492 MobiDBLite consensus disorder prediction 144 207 - -
Aed3g2097 492 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 307 317 IPR000408 -
Aed3g2097 492 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 69 121 IPR000408 -
Aed3g2097 492 Pfam Regulator of chromosome condensation (RCC1) repeat 105 129 - -
Aed3g2097 492 Pfam Regulator of chromosome condensation (RCC1) repeat 224 253 - -
Aed3g2097 492 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 321 372 IPR000408 -
Aed3g2097 492 Gene3D - 183 278 IPR009091 -
Aed3g2097 492 PRINTS Chromosome condensation regulator RCC1 signature 362 380 IPR000408 -
Aed3g2097 492 PRINTS Chromosome condensation regulator RCC1 signature 124 140 IPR000408 -
Aed3g2097 492 PRINTS Chromosome condensation regulator RCC1 signature 435 456 IPR000408 -
Aed3g2097 492 PRINTS Chromosome condensation regulator RCC1 signature 227 243 IPR000408 -
Aed3g2097 492 PRINTS Chromosome condensation regulator RCC1 signature 105 118 IPR000408 -
Aed3g2097 492 Pfam Regulator of chromosome condensation (RCC1) repeat 321 368 IPR000408 -
Aed3g2097 492 Pfam Regulator of chromosome condensation (RCC1) repeat 440 487 IPR000408 -
Aed3g2097 492 Pfam Regulator of chromosome condensation (RCC1) repeat 372 394 IPR000408 -
Aed3g2097 492 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 241 320 IPR000408 -
Aed3g2097 492 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 227 237 IPR000408 -
Aed3g2097 492 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 15 492 - -
Aed3g2097 492 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN 15 492 - -
Aed3g2097 492 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 440 490 IPR000408 -
Aed3g2097 492 MobiDBLite consensus disorder prediction 157 183 - -
Aed3g2097 492 Gene3D - 11 170 IPR009091 -
Aed3g2097 492 Gene3D - 429 492 IPR009091 -
Aed3g2097 492 Gene3D - 279 417 IPR009091 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g2097 Aed-Chr3 24876121 24881209 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g2097 - - gmx:100807837 844.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g2097 3 24876121 24881209 Aed3g2097 3 24876121 24881209 ECH
Aed7g2123 7 23767982 23774270 Aed3g2097 3 24876121 24881209 PCT