Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2047 ATGGATGACGAGGTGCGCCAGATCTTCAACAAGTTCGACAAGAACGGCGACGGAAAAATCTCGATCATGGAGCTTGAGGACATGCTCGGCGCGCTCGGATCCAAAACGACGAGCGACGAGTTAAAACGCATGATGGAGGAGCTCGATCAGAACGGCGACGGCTTCATCGACCTGAAGGAGTTCGCGGATTTTCACTGCAATGACGCAGGAAAGGACGACTCGAAGGAGCTCCGCGACGCGTTCGATCTCTACGACGTCGACAAGAACGGCCTCATATCCGCGAAGGAGTTGCACGACGTGCTCCGAAAGCTCGGCGAGAAGTGCTCCCTTGGCGACTGCCGGAGAATGATCAGCAACGTCGATGCCGACGGCGACGGCAGCGTCAACTTCGAGGAGTTCAAGAAGATGATGACTCGCTCTTAG 423 0.5603 MDDEVRQIFNKFDKNGDGKISIMELEDMLGALGSKTTSDELKRMMEELDQNGDGFIDLKEFADFHCNDAGKDDSKELRDAFDLYDVDKNGLISAKELHDVLRKLGEKCSLGDCRRMISNVDADGDGSVNFEEFKKMMTRS 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2047 140 Gene3D - 67 140 - -
Aed3g2047 140 ProSiteProfiles EF-hand calcium-binding domain profile. 36 71 IPR002048 GO:0005509
Aed3g2047 140 ProSitePatterns EF-hand calcium-binding domain. 13 25 IPR018247 -
Aed3g2047 140 CDD EFh 76 138 IPR002048 GO:0005509
Aed3g2047 140 ProSitePatterns EF-hand calcium-binding domain. 85 97 IPR018247 -
Aed3g2047 140 SUPERFAMILY EF-hand 3 139 IPR011992 -
Aed3g2047 140 Pfam EF-hand domain pair 76 138 IPR002048 GO:0005509
Aed3g2047 140 Pfam EF-hand domain pair 4 64 IPR002048 GO:0005509
Aed3g2047 140 ProSiteProfiles EF-hand calcium-binding domain profile. 1 35 IPR002048 GO:0005509
Aed3g2047 140 ProSitePatterns EF-hand calcium-binding domain. 49 61 IPR018247 -
Aed3g2047 140 SMART efh_1 112 140 IPR002048 GO:0005509
Aed3g2047 140 SMART efh_1 40 68 IPR002048 GO:0005509
Aed3g2047 140 SMART efh_1 4 32 IPR002048 GO:0005509
Aed3g2047 140 SMART efh_1 76 104 IPR002048 GO:0005509
Aed3g2047 140 ProSitePatterns EF-hand calcium-binding domain. 121 133 IPR018247 -
Aed3g2047 140 CDD EFh 4 65 IPR002048 GO:0005509
Aed3g2047 140 Gene3D - 1 66 - -
Aed3g2047 140 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 1 140 - -
Aed3g2047 140 ProSiteProfiles EF-hand calcium-binding domain profile. 72 107 IPR002048 GO:0005509
Aed3g2047 140 ProSiteProfiles EF-hand calcium-binding domain profile. 108 140 IPR002048 GO:0005509
Aed3g2047 140 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 1 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g2047 Aed-Chr3 24513666 24514088 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g2047 3 138 EF-hand Containing Proteins AT1G18210 56.618 1.67e-51 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g2047 K13448 - gmx:100796491 259.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed7g2179 7 24332986 24335973 Aed3g2047 3 24513666 24514088 PCT