Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2019 ATGGCTCTGTTTTCCTCTGTTTCACTCTGCATGTTTCTCTTTTCATTCTTGTTCTTCTCCACTTTCTCCTCCGCCACGGACTCAGTCTCAGTCTCTTTCCCTCTCACCTCACTCCCTCTCTCCACAGCAAAGCCTCTAAACACCAACCCAAAACTCAGAACCCTCTCCGCTTCCTCCTACAACATAAAATCCTCGTTCAAATACTCCATGGCTCTGGTTGTGACTCTCCCAATAGGAACCCCTCCGCAGCATCAACAAATGGTCTTGGACACTGGAAGCCAACTCTCTTGGATTCAGTGCCACAACAAAACCCCCCCAACGGCGTCGTTCGACCCTTCACTTTCTTCTTCTTTCTACGTCATCCCCTGCACCCACCCTCTCTGCAAACCCCGTGTTCCCGATTTTACCCTCCCCACAACCTGCGACCAGAACCGTTTATGTCACTACTCCTACTTCTACGCAGACGGCACCTACGCGGAGGGTAACCTGGTCAGAGAAAAACTCAGCTTCTCCCCTTCCCAAACTACCCCTCCGCTCATCCTCGGCTGCGCCACGGAATCCAAGGACGCCAGGGGCATTCTCGGAATGAACCTCGGCCGCTTGTCCTTCCCCTCCCAAGCCAAAATTACGAAATTCTCGTACTGTGTCCCCACCCGACAACCCGGGAACAACAACAATCTCCCAACCGGGTCGTTCTACCTCGGTAACAACCCCAACTCCGGGCGCTTCCGCTACGTCAGCATGTTGACCTTCAGTCAAAGTCAACGCATGCCGAACCTGGACCCCTTGGCCTACACCGTCCCCATGCAAGGAATAAGAATCGGTGCCAAAAAACTCAGCATCCCGCCTTCGGCTTTTCGGCCCAACGCTGGCGGGTCGGGTCAGACCATGGTCGATTCCGGATCCGAATTCACGTTCCTTGTGGACGCCGCTTACGATATAGTGCGGGAGGAGGTTATTAGAATAGTGGGGCCCAGGGTCAAGAAGGGGTACGTGTACGGTGGAGTCGCGGACATGTGTTTCGATGGGAAGAACGTGATGGAGATCGGACGGTTGATAGGGAACGTGGTTTTCGAGTTCGAGAAAGGCGTGGAGATCGTGGTTCCGAAGGAGAGGCTGCTCGCTGACGTGGGAGGTGGGGTCCACTGCGTGGGAATTGGGAGGTCCGAAAGATTGGGTGCGGCAAGCAACATCATTGGCAACTTCCACCAACAAAATCTATGGGTGGAGTTCGATCTCGCGAATCGCAGAATTGGATTCGGTGTGGCCGATTGTAGCAGATTGGGTTAA 1290 0.5403 MALFSSVSLCMFLFSFLFFSTFSSATDSVSVSFPLTSLPLSTAKPLNTNPKLRTLSASSYNIKSSFKYSMALVVTLPIGTPPQHQQMVLDTGSQLSWIQCHNKTPPTASFDPSLSSSFYVIPCTHPLCKPRVPDFTLPTTCDQNRLCHYSYFYADGTYAEGNLVREKLSFSPSQTTPPLILGCATESKDARGILGMNLGRLSFPSQAKITKFSYCVPTRQPGNNNNLPTGSFYLGNNPNSGRFRYVSMLTFSQSQRMPNLDPLAYTVPMQGIRIGAKKLSIPPSAFRPNAGGSGQTMVDSGSEFTFLVDAAYDIVREEVIRIVGPRVKKGYVYGGVADMCFDGKNVMEIGRLIGNVVFEFEKGVEIVVPKERLLADVGGGVHCVGIGRSERLGAASNIIGNFHQQNLWVEFDLANRRIGFGVADCSRLG 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2019 429 SUPERFAMILY Acid proteases 73 427 IPR021109 -
Aed3g2019 429 ProSiteProfiles Peptidase family A1 domain profile. 72 421 IPR033121 -
Aed3g2019 429 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 87 98 IPR001969 GO:0004190|GO:0006508
Aed3g2019 429 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 10 428 - -
Aed3g2019 429 Pfam Xylanase inhibitor N-terminal 73 227 IPR032861 -
Aed3g2019 429 Pfam Xylanase inhibitor C-terminal 264 420 IPR032799 -
Aed3g2019 429 Gene3D Acid Proteases 51 235 IPR021109 -
Aed3g2019 429 PANTHER ASPARTYL PROTEASE-RELATED 10 428 IPR001461 GO:0004190|GO:0006508
Aed3g2019 429 Gene3D Acid Proteases 236 428 IPR021109 -
Aed3g2019 429 CDD pepsin_A_like_plant 73 425 IPR034161 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g2019 Aed-Chr3 24236971 24238260 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g2019 74 428 Miscellaneous Gene Families AT1G44130 23.367 8.34e-19 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g2019 - - gmx:100790706 770
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed7g2196 7 24552549 24553913 Aed3g2019 3 24236971 24238260 PCT