Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1975 ATGGCAGACCCTCAGAAAATTCACCCTGTGCACCATGATGTTGAGTCACAAAACCACCCTACAGCACCATTGGTTCCAAGAAGCATGTCCAAATCTGATGCAGCTGATCCAGAAACAGTGCCACAGCAACAACAACAACAGAAGAGGCACTCATCAAAGCCAAAGCCACCAAAGAAAAGAAGAAGCTGCTGCTGCAGGTTCTTCTGCTGGCTAATAAGCATATTGCTGATTCTGATTGTGGCAATTGGCATCACTGTTGGAATACTCTACCTTGTGTTCAGACCAAAGCTTCCAAAGTACTCAGTGGATGAACTCAGAGTCACACAGTATCTTGAAAACAACAACAACAGTTTATCAGTGACATTCAACTTGACAATCACAGCCAGAAACCCCAACAAGAAGATTGGAATATACTACAGAGGTGGCAGCCACATAAGTGCTTGGTACATGGACACTAAACTCTGTGAAGGGTCTCTGCCAAAATTCTACCAAGGTCACAGAAACACAACAGTGCTTAGTATCCCTCTCAGTGGGGAAACACAAGATGCTAGTGGCTTTCGAAGTTCACTTCAGCAGCAGCTGCAGGAAACTGGGAATGTACCTCTCGAATTGAAGGTGAAGCAACCTGTGAGGATCAAGCTTGGGAAGTTGAAGCTCTTCACTATCAAGTTCAGGGTTAGGTGCAAGATTGTGGTGGATAATCTTAGTGCTGATAGCTCTATTAGAATCCAGAGCAGTAGTTGTAAATTCAGGTTGAGGCTGTGA 765 0.4458 MADPQKIHPVHHDVESQNHPTAPLVPRSMSKSDAADPETVPQQQQQQKRHSSKPKPPKKRRSCCCRFFCWLISILLILIVAIGITVGILYLVFRPKLPKYSVDELRVTQYLENNNNSLSVTFNLTITARNPNKKIGIYYRGGSHISAWYMDTKLCEGSLPKFYQGHRNTTVLSIPLSGETQDASGFRSSLQQQLQETGNVPLELKVKQPVRIKLGKLKLFTIKFRVRCKIVVDNLSADSSIRIQSSSCKFRLRL 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1975 254 PANTHER EMBRYOGENESIS ABUNDANT HYDROXYPROLINE-RICH GLYCOPROTEIN, PUTATIVE-RELATED 20 252 - -
Aed3g1975 254 MobiDBLite consensus disorder prediction 35 50 - -
Aed3g1975 254 Pfam Late embryogenesis abundant protein 125 229 IPR004864 -
Aed3g1975 254 MobiDBLite consensus disorder prediction 1 15 - -
Aed3g1975 254 MobiDBLite consensus disorder prediction 1 61 - -
Aed3g1975 254 PANTHER LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY 20 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g1975 Aed-Chr3 23897054 23897818 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g1975 58 254 EF-hand Containing Proteins AT5G21130 32.500 3.36e-31 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g1975 - - gmx:100778798 390.963
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g1975 3 23897054 23897818 Aed3g1975 3 23897054 23897818 ECH
Aed4g2115 4 24121400 24122155 Aed3g1975 3 23897054 23897818 PCT