Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g1658 ATGTCAAGTGGTGGATGCAGCATAGTGTGGTTCAGGAGAGATCTGAGAGTGGAGGATAACCCTGCACTGGCTGCAGGAGTGAGAGCAGATCCGTTGTCACTTGTGAGGGATCACAGAGCAAAGGAGGTTCTGACGGCTCAAGGCATTACCGTACGTTCCTTCAACTCAGACCTATTGTATGAGCCATGGGATGTGAATGATGCTCATGGCCAACCATTCACAACTTTTTCTGCTTTTTGGGAAAGATGCCTCAACATGCCTTATGACCCACAAGCACCTCTTCTCCCACCTAAAAGGATTATTCCAGACGAATCAGAGAAGGCGAGCAATGCGCTTCTAGCTCGAGCATGGTCACCTGGGTGGAGCAACGCAGACAAGGCATTGACAACATTCATAAACGGTGCTCTGATCAACTACTCGTATAACCGCAGGAAGGCTGATACCGCCACAACCTCGTTTCTGTCACCACATTTGCACTTTGGTGAAGTGAGTGTGAAGAAAGTGTTCCACCTTGTCCGAATCAAGCAAGTGTTTTGGGCCAATGAGGGTAACAAAGCTGGTGAAGAGAGCGTTAACTTGTTCCTCAAGTCAATTGGTCTCAGAGAGTATTCAAGGTACATTAGTTTCAACCACCCTTATAGTCATGAGAGGCCCCTTCTAGGACACCTTAAGTTTTTCCCTTGGGTGGTGAATGAAGGATATTTTAAGTCTTGGAGACAGGGAAGGACAGGGTACCCTTTAGTGGATGCTGGAATGAGAGAGTTGTGGGCAACTGGCTGGTTGCATGATCGGATACGTGTCGTGGTTTCAAGTTTCTTTGTGAAGGTGCTTCAGCTTCCTTGGAGATGGGGGATGAAGTACTTTTGGGATACACTTTTGGATGCTGATCTTGAGAGTGATGCTCTTGGTTGGCAGTACATATCTGGCACTCTCCCTGATGGTCGCGAATTCGACCGAATAGATAATCCACAGTTTGAGGGGTACAAATGTGACCCAAATGGAGAATATGTACGACGCTGGCTTCCTGAACTTGCTAGATTACCAACTGAATGGATACACCATCCATGGAATGCACCAGAGTCTGTACTCCAAGCTGCTGGAATTGAACTTGGTTCAAACTACCCTCTTCCCATTGTTGGCATAGATGCAGCAAAAGAAAGACTTCAAGAAGCACTAATACAAATGTGGCAACAAGAAGCAGCTTCAAGAGCTGCAATCGAAAACGGAACCGAAGAAGGCCTCGGAGACTCATCTGAATCAGCCCCTATTGCATTTCCTCAAGACATTCAAATGGAGGAAAGGCCTGAACCTGTTAGGAACAACCCGCCTCATGGTACTCGGCGCTACCAGGACCAGATGGTCCCAAGTATCACTTCCTCCCTTGTGAGAGTGGAAGAGGAGGAAACATCCTCAGACCTTCGAAACTCGGCTGCAAACAACAGAGCCGAAGTGCCTATAAATGTGACTGCACAACTAGATGCAAGAGAGACAGTGAATCAGGGAGTGTTGCTGAATGCTAATAGGAACACTAGAGTACAGAATAATGCTGCAATGAGGCTGAGAAATGCAGCTGAAGATTCCACAGCAGAATCTTCAAGTAGTACTAGGAGAGAAAGGGATGGGGGTGTAGTTCCAGTATGGTCCCCCCCAGCTTCTAACTTCTCAGAACAGTTTGTAGATGATGAAAGTGGTAATCCACATCTAGAACATGCCGATTAG 1719 0.4706 MSSGGCSIVWFRRDLRVEDNPALAAGVRADPLSLVRDHRAKEVLTAQGITVRSFNSDLLYEPWDVNDAHGQPFTTFSAFWERCLNMPYDPQAPLLPPKRIIPDESEKASNALLARAWSPGWSNADKALTTFINGALINYSYNRRKADTATTSFLSPHLHFGEVSVKKVFHLVRIKQVFWANEGNKAGEESVNLFLKSIGLREYSRYISFNHPYSHERPLLGHLKFFPWVVNEGYFKSWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGREFDRIDNPQFEGYKCDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVGIDAAKERLQEALIQMWQQEAASRAAIENGTEEGLGDSSESAPIAFPQDIQMEERPEPVRNNPPHGTRRYQDQMVPSITSSLVRVEEEETSSDLRNSAANNRAEVPINVTAQLDARETVNQGVLLNANRNTRVQNNAAMRLRNAAEDSTAESSSSTRRERDGGVVPVWSPPASNFSEQFVDDESGNPHLEHAD 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g1658 572 Pfam DNA photolyase 33 87 IPR006050 -
Aed3g1658 572 Pfam DNA photolyase 7 29 IPR006050 -
Aed3g1658 572 ProSitePatterns DNA photolyases class 1 signature 2. 263 282 IPR018394 -
Aed3g1658 572 Pfam Blue/Ultraviolet sensing protein C terminal 421 536 IPR020978 -
Aed3g1658 572 PANTHER CRYPTOCHROME-1 30 510 - -
Aed3g1658 572 PRINTS DNA photolyase signature 302 316 IPR002081 -
Aed3g1658 572 PRINTS DNA photolyase signature 263 281 IPR002081 -
Aed3g1658 572 PRINTS DNA photolyase signature 68 84 IPR002081 -
Aed3g1658 572 PRINTS DNA photolyase signature 243 259 IPR002081 -
Aed3g1658 572 PANTHER CRYPTOCHROME 1 29 IPR002081 -
Aed3g1658 572 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 4 103 IPR036155 -
Aed3g1658 572 TIGRFAM crypt_chrom_pln: cryptochrome, plant family 30 392 IPR014134 GO:0009785|GO:0009882
Aed3g1658 572 Coils Coil 381 401 - -
Aed3g1658 572 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 105 399 IPR036134 -
Aed3g1658 572 ProSitePatterns DNA photolyases class 1 signature 1. 243 255 IPR018394 -
Aed3g1658 572 Gene3D HUPs 1 31 IPR014729 -
Aed3g1658 572 PANTHER CRYPTOCHROME-1 1 29 - -
Aed3g1658 572 PANTHER CRYPTOCHROME 30 510 IPR002081 -
Aed3g1658 572 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 212 413 - -
Aed3g1658 572 MobiDBLite consensus disorder prediction 519 572 - -
Aed3g1658 572 Gene3D - 59 204 - -
Aed3g1658 572 Pfam FAD binding domain of DNA photolyase 194 391 IPR005101 -
Aed3g1658 572 Gene3D HUPs 32 117 IPR014729 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g1658 Aed-Chr3 21245299 21250380 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g1658 K12118 - gmx:100786551 1023.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g1658 3 21245299 21250380 Aed3g1658 3 21245299 21250380 ECH
Aed3g1658 3 21245299 21250380 Aed10g0203 10 1617081 1620540 PCT